Locus 7202

Sequence ID 3L_DroMel_CAF1
Location 19,331,543 – 19,331,640
Length 97
Max. P 0.633096
window11698

overview

Window 8

Location 19,331,543 – 19,331,640
Length 97
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 80.68
Mean single sequence MFE -22.17
Consensus MFE -15.11
Energy contribution -15.20
Covariance contribution 0.09
Combinations/Pair 1.23
Mean z-score -1.44
Structure conservation index 0.68
SVM decision value 0.20
SVM RNA-class probability 0.633096
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19331543 97 + 23771897
CUUUG--AACACUUAAAAAGAAA------CGCU--------CACGCAGACGAUGUCAAAAGCCAUCAAACAUGGCCA-ACA-AAAUGGCUUUUUAAUACGUGUAAGUGUGGCCAA
.....--............(..(------((((--------.((((....((((.(....).))))......(((((-...-...))))).........)))).)))))..)... ( -20.00)
>DroPse_CAF1 113790 99 + 1
CCUGAGAAGCACUUAAAAGGAAA------CUCC--------CACGCAGACGAUGUCAAGAGCCAUCAAACAUGGCCA-ACA-AAAUGGCUUUUUAAUACGUGUAAGUGUGGCCGA
..((.(..(((((((..((....------))..--------((((..(((...)))(((((((((......((....-.))-..))))))))).....)))))))))))..))). ( -23.00)
>DroSec_CAF1 165463 89 + 1
CUUUG--AACACUUAAAAAGAAA------CGCU--------CACGCAGACGAUGUCAAAAGCCAUCAAACAUGGCCA-ACA-AAAUGACUUUUUAAUACGUGUAAGU--------
.....--.((((((((((((...------.((.--------...)).(((...)))....(((((.....)))))..-...-......))))))))...))))....-------- ( -15.20)
>DroMoj_CAF1 133839 103 + 1
CCUG----ACGCUUGUCAAGG--------CGCCUCACGCGCCGCACGGCCGAUGUUAAAAGCCAUCAAAUAUGGCCAAACACAAAUGGCUUUUUAAUACGUGUAAGUGUGGCUAA
..((----((((((....)))--------))..)))...(((((((.((((.(((((((((((((......((......))...))))).)))))))))).))..)))))))... ( -31.60)
>DroAna_CAF1 146351 103 + 1
CCUUG--AACACUUAAAAAGAAACGCAAACGCU--------CACGCAGACGAUGUCAAAAGCCAUCAAACAUGGCCA-AUA-AAAUGGCUUUUUAAUACAUGUAAGUGUGGCCAA
.....--.......................((.--------(((((..((.((((.(((((((((............-...-..)))))))))....))))))..)))))))... ( -20.23)
>DroPer_CAF1 102237 99 + 1
CCUGAGAAGCACUUAAAAGGAAA------CUCC--------CACGCAGACGAUGUCAAGAGCCAUCAAACAUGGCCA-ACA-AAAUGGCUUUUUAAUACGUGUAAGUGUGGCCGA
..((.(..(((((((..((....------))..--------((((..(((...)))(((((((((......((....-.))-..))))))))).....)))))))))))..))). ( -23.00)
>consensus
CCUGG__AACACUUAAAAAGAAA______CGCC________CACGCAGACGAUGUCAAAAGCCAUCAAACAUGGCCA_ACA_AAAUGGCUUUUUAAUACGUGUAAGUGUGGCCAA
.........................................(((((..((.((((.(((((((((......((......))...)))))))))....))))))..)))))..... (-15.11 = -15.20 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:44 2006