| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,316,800 – 19,316,902 |
| Length | 102 |
| Max. P | 0.619272 |
| Location | 19,316,800 – 19,316,902 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 86.08 |
| Mean single sequence MFE | -28.80 |
| Consensus MFE | -23.23 |
| Energy contribution | -23.65 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.619272 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19316800 102 + 23771897 UCCG---CCUAGGCCCUGAUUAUUGUUGACUGUGUUAAUAAUGAAAAAGACAGUUGCAAACAGCUGUGGCUUGGCUGAAGAAACUGA-----ACUAAAGUUACAGACUCC- ((.(---((.(((((((..(((((((((((...)))))))))))...))(((((((....))))))))))))))).)).....((((-----((....))).))).....- ( -31.50) >DroPse_CAF1 87113 94 + 1 UCCG---CCUAGGCCCUGAUUAUUGUUGACUGUGUUAAUAAUGGAAAAGACAGUUGCAAACAGCUGUGGCUUGGCUU---------G-----ACUGGCGUAACAGACUCCC ...(---((.(((((((..(((((((((((...)))))))))))...))(((((((....)))))))))))))))..---------.-----.(((......)))...... ( -29.10) >DroEre_CAF1 150171 102 + 1 UCCG---CCUAGGCCCUGAUUAUUGUUGACUGUGUUAAUAAUGAAAAAGACAGUUGCAAACAGCUGCGGCUUGGCUGAAGAAACUGA-----ACUGAAGUAACAGACUCC- ((.(---((.(((((....(((((((((((...)))))))))))....(.((((((....))))))))))))))).)).........-----.(((......))).....- ( -28.10) >DroYak_CAF1 171832 107 + 1 UCCG---CCUAGGCCCUGAUUAUUGUUGACUGUGUUAAUAAUGAAAAAGACAGUUGCAAACAGCUGUGGCUUGGCUGAAGAAACUGAACUGAACUGAAGUAACAGACUCC- ((.(---((.(((((((..(((((((((((...)))))))))))...))(((((((....))))))))))))))).)).....(((.(((.......)))..))).....- ( -30.30) >DroAna_CAF1 132885 91 + 1 UCCAGUUCCUAGGCCCUGAUUAUUGUUGACUGUGUUAAUAAUGGAAAAGACAGUUGCAAACAGCUGUGGCUUGAC-------------------UGAAGUAACAGACUCC- ..(((((...(((((((..(((((((((((...)))))))))))...))(((((((....)))))))))))))))-------------------))..............- ( -24.70) >DroPer_CAF1 86789 94 + 1 UCCG---CCUAGGCCCUGAUUAUUGUUGACUGUGUUAAUAAUGGAAAAGACAGUUGCAAACAGCUGUGGCUUGGCUU---------G-----ACUGGCGUAACAGACUCCC ...(---((.(((((((..(((((((((((...)))))))))))...))(((((((....)))))))))))))))..---------.-----.(((......)))...... ( -29.10) >consensus UCCG___CCUAGGCCCUGAUUAUUGUUGACUGUGUUAAUAAUGAAAAAGACAGUUGCAAACAGCUGUGGCUUGGCUG_________A_____ACUGAAGUAACAGACUCC_ ........(((((((((..(((((((((((...)))))))))))...))(((((((....))))))))))))))...................(((......)))...... (-23.23 = -23.65 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:40 2006