Locus 7197

Sequence ID	3L_DroMel_CAF1
Location	19,313,968 – 19,314,083
Length	115
Max. P	0.574825

overview

Window 8

Location	19,313,968 – 19,314,083
Length	115
Sequences	6
Columns	119
Reading direction	forward
Mean pairwise identity	83.56
Mean single sequence MFE	-41.22
Consensus MFE	-28.55
Energy contribution	-29.00
Covariance contribution	0.45
Combinations/Pair	1.23
Mean z-score	-1.95
Structure conservation index	0.69
SVM decision value	0.08
SVM RNA-class probability	0.574825
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19313968 115 + 23771897
UCUCGCCGCCCUGCUCCGUGUCCACAAACUCGUAGUUCAGAGCAAACUGAGCGGGAAACAGGGCGGUGCCGGUAUGCGUGUGGAACUCCAGUUUCUGUCAGGGG-AAA--UGGUAAU-A
....(((((((((.(((((....)).........((((((......)))))).)))..)))))))))((((...(.(.((.(((((....)))))...)).).)-...--))))...-. ( -39.80)
>DroVir_CAF1 93135 114 + 1
UUUCACCGCCCUGUUCUGUGUCCACGAACUCGUAGUUCAGUGCAAAUUGAGCGGGAAACAGGGCGGUGCCCGUGUGCGUGUGGAAUUCCAGUUUCUGCAAAUAG-CA---UAGCAAA-A
...((((((((((((.....((((((....))).(((((((....)))))))))).))))))))))))....(((((.((..(((.......)))..))....)-))---)).....-. ( -46.20)
>DroGri_CAF1 117373 115 + 1
UUUCGCCGCCCUGUUCCGUGUCAACAAACUCAUAGUUCAGUGCAAAUUGGGCCGGAAAUAGGGCGGUGCCUGUGUGCGUGUGGAAUUCCAGUUUCUGCAAAUACGAA---AAGUAAA-A
((((((((((((((((((.(((....(((.....)))((((....)))))))))).)))))))))))....((((...((..(((.......)))..)).)))))))---)......-. ( -40.70)
>DroEre_CAF1 147476 116 + 1
UCUCGCCACCCUGCUCCGUGUCCACAAACUCGUAGUUCAGCGCAAACUGUGCUGGGAAUAAGGCGGUGCCCGUGUGCGUGUGGAACUCCAGUUUCUGAAAGGGG-AAAU-UGGUAAU-A
(((((((((...((.((((.(((...(((.....)))((((((.....))))))))).....)))).))..))).)))...)))...(((((((((......))-))))-)))....-. ( -36.30)
>DroMoj_CAF1 108333 114 + 1
UCUCGCCGCCCUGUUCCGUGUCCACAAACUCGUAGUUCAGUGCAAAUUGAGCGGGAAACAGGGCGGUGCCCGUGUGCGUGUGGAACUCCAGUUUCUGCAAAUAG-CA---CGGCAAA-A
...((((((((((((((((....)).........(((((((....))))))).)).)))))))))))).((((((...((..((((....).)))..))....)-))---)))....-. ( -49.10)
>DroAna_CAF1 130624 118 + 1
UUUCUCCGCCCUGUUCCGUGUCCACAAACUCGUAAUUCAGGGCAAACUGGGCCGGGAACAAGGCGGUGCCCGUAUGCGUGUGGAACUCCAGUUUCUGCAAUAAA-AAUUUUGGUAUUUU
.....(((((.((((((..(((((....(((........))).....)))))..)))))).)))))((((((....))((..((((....).)))..)).....-......)))).... ( -35.20)
>consensus
UCUCGCCGCCCUGUUCCGUGUCCACAAACUCGUAGUUCAGUGCAAACUGAGCGGGAAACAGGGCGGUGCCCGUGUGCGUGUGGAACUCCAGUUUCUGCAAAUAG_AA___UGGUAAA_A
...((((((((((((((((....)).........((((((......)))))).)).))))))))))))......((((...(((((....))))))))).................... (-28.55 = -29.00 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:35 2006