Locus 7196

Sequence ID 3L_DroMel_CAF1
Location 19,312,205 – 19,312,295
Length 90
Max. P 0.994163
window11687

overview

Window 7

Location 19,312,205 – 19,312,295
Length 90
Sequences 3
Columns 92
Reading direction reverse
Mean pairwise identity 79.70
Mean single sequence MFE -20.83
Consensus MFE -15.91
Energy contribution -15.37
Covariance contribution -0.55
Combinations/Pair 1.22
Mean z-score -2.65
Structure conservation index 0.76
SVM decision value 2.46
SVM RNA-class probability 0.994163
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19312205 90 - 23771897
--UUUCAGCAAGCGUACUUGAGCUUUCAGGCAGAAAAGUGCUCAUGCUUUAGCAUACUGAGUCUUAGAAUAGCAAAGUAGCUACAAAAAAUU
--....((((.(.((((((..(((....)))....)))))).).)))).((((.((((..(.((......)))..))))))))......... ( -20.00)
>DroSec_CAF1 145422 87 - 1
ACUUUCAGCAAGAGCACUUGAGCUUUCAUGCAGAAAAGUGUUUGUGCUUAAGCAUACUGAG-----AAAAAUAAAAGCAAAUAUAACAAACU
..((((((...((((((((..((......))....))))))))((((....)))).)))))-----)......................... ( -18.20)
>DroSim_CAF1 162028 87 - 1
ACUUUCAGCAAGAGCACUUCAGCUUUCAUGCUGAAAAGUGUUUGUGCUUAAGCAUACUGAG-----GAAAAUCAAUGCAAAUAUAACAAAAU
......((((.((((((((((((......)))))..))))))).))))...((((..(((.-----.....))))))).............. ( -24.30)
>consensus
ACUUUCAGCAAGAGCACUUGAGCUUUCAUGCAGAAAAGUGUUUGUGCUUAAGCAUACUGAG_____GAAAAUCAAAGCAAAUAUAACAAAAU
....((((...((((((((..((......))....))))))))((((....)))).))))................................ (-15.91 = -15.37 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:34 2006