| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,309,858 – 19,309,968 |
| Length | 110 |
| Max. P | 0.977713 |
| Location | 19,309,858 – 19,309,968 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 74.47 |
| Mean single sequence MFE | -39.40 |
| Consensus MFE | -28.88 |
| Energy contribution | -27.48 |
| Covariance contribution | -1.40 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.73 |
| SVM decision value | 1.80 |
| SVM RNA-class probability | 0.977713 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19309858 110 - 23771897 ---GUUGUCGUUGUCGGCGGUUGCUGGUUGCUGGUUGUUGGCGAUUGUUGGCCGACUGGCGGGAUGGCGGGAUGGCGGGAUUGGGCCGGUUGUUGGACAAACCCGCAGCGGCA ---..((((((((((((((((((((..(........)..)))))))))))((((.((.((......)).)).))))(((.(((..(((.....))).))).)))))))))))) ( -45.10) >DroSec_CAF1 143144 85 - 1 ---GUUGUCGUUGUCGGCGGUUGC-------UGGUUGUUGGCGAUUGUUGGCCGACUGGCGG----------------GAU--GGCCGGUUGUUGGACAAACCCGCAGCGGCA ---..((((((((.(((.((((((-------..(...)..)))))((((.(.((((((((..----------------...--.)))))))).).))))..)))))))))))) ( -36.90) >DroSim_CAF1 159740 96 - 1 ---GUUGUCGUUGUCGGCGGUUGC-------UGGUUGUUGGCGAUUGUUGGCCGACUGGCGGGAUGGCG-----GCGGGAU--GGCCGGUUGUUGGACAAACCCGCAGCGGCA ---..(((((((((((((((((((-------..(...)..))))))....))))))..(((((....((-----((.....--.))))(((....)))...)))))))))))) ( -41.10) >DroEre_CAF1 143360 92 - 1 ---GUUGUCGUUGUCGGCGGUUGCUGGUUGCUGGUUGUUGGCGAUUGUUGGCCGACUGGCGGG----------------AU--GGCUGGUUGUUGGACAAACCCGCAGCAGCC ---((..((.(((((((((((((..((((((..(...)..))))))..)))))).))))))))----------------).--.)).(((((((((.......).)))))))) ( -36.50) >DroAna_CAF1 126701 95 - 1 GAUGUUGUUGUUGCAGCCGGCUGGUGGAAGCUGGUUGGAGCUGGU-GGUAGCCGG-UGGUUG----------------UACGUUGUUGGUUGUUGGACAAACCCGCAGCAGCA ..(((((((((((((((((.(((((....((..((....))..))-....)))))-))))))----------------)).......((((........)))).))))))))) ( -37.40) >consensus ___GUUGUCGUUGUCGGCGGUUGCUGG__GCUGGUUGUUGGCGAUUGUUGGCCGACUGGCGGG_______________GAU__GGCCGGUUGUUGGACAAACCCGCAGCGGCA ...(((((((..(((((((((((((..............))))))))))))))))).)))........................((((.((((.((.....)).)))))))). (-28.88 = -27.48 + -1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:33 2006