Locus 7194

Sequence ID 3L_DroMel_CAF1
Location 19,308,666 – 19,308,774
Length 108
Max. P 0.768243
window11685

overview

Window 5

Location 19,308,666 – 19,308,774
Length 108
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 77.02
Mean single sequence MFE -42.35
Consensus MFE -24.02
Energy contribution -27.08
Covariance contribution 3.06
Combinations/Pair 1.22
Mean z-score -1.77
Structure conservation index 0.57
SVM decision value 0.52
SVM RNA-class probability 0.768243
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19308666 108 - 23771897
GCAUUGCAGCAGCCCUGACCGCCUGCCUGAUAUUCUGCAUGUUCGGCCUGAUGAGGAAGCGGAAAAAGUCGGUGGUGCAGAAGGGCGCCGGAGUGGGCGGCAUGGGC---G
((......)).((((((.(((((..((((((.((((((.(.((((......)))).).))))))...)))))((((((......))))))..)..))))))).))))---. ( -48.30)
>DroVir_CAF1 87613 88 - 1
GCAUUGCUGCAGCGUUGACCGCCUGCCUCAUAUUCUGCAUGUUUGGACUGAUGCGCAAGCGAAAAAAGUCGGUGGUGCAGAAGAGCGG-----------------------
....((((((((((.....)).))))......((((((((...(.((((..(((....))).....)))).)..)))))))).)))).----------------------- ( -29.30)
>DroPse_CAF1 79565 104 - 1
GCAUCGCUGCCGCUCUGACCGCAUGCCUAAUCUUCUGCAUGUUCGGGCUGAUGCGAAAGCGCAAAAAGAGUGUGGUGCAGAAGGGUGGCGGCGUUGGCGGCGUU-------
((..((((((((((((((((((((((((...(........)...))))((.(((....)))))......))))))).))))...)))))))))...))......------- ( -44.80)
>DroWil_CAF1 60934 108 - 1
GCAUUGCUGCCGCUUUGACAGCAUGCCUCAUAUUCUGUAUGUUUGGUCUAAUGCGUAAGAGAAAAAAGUCGGUGGUGCAAAAGGGCGGUGGAGGCGGCGGAAUGGGC---G
((....((((((((((.(((((((((..........)))))))..((((..((((..(..((......))..)..))))...)))).)).)))))))))).....))---. ( -35.00)
>DroAna_CAF1 125689 111 - 1
GCAUUGCUGCCGCCCUGACCGCCUGCCUCAUAUUCUGCAUGUUCGGCCUGAUGCGCAAACGGAAAAAGUCGGUGGUGCAGAAGGGCGGCGGCAUGGGUGGUGUGGGUGUGG
(((((..((((((((((.(((((.((((....((((((((..(((((.(..(.((....)).)..).)))))..))))))))))))))))))).))))))))..))))).. ( -51.90)
>DroPer_CAF1 79250 104 - 1
GCAUCGCUGCCGCUCUGACCGCAUGCCUAAUCUUCUGCAUGUUCGGGCUGAUGCGAAAGCGCAAAAAGAGUGUGGUGCAGAAGGGUGGCGGCGUUGGCGGCGUU-------
((..((((((((((((((((((((((((...(........)...))))((.(((....)))))......))))))).))))...)))))))))...))......------- ( -44.80)
>consensus
GCAUUGCUGCCGCUCUGACCGCAUGCCUCAUAUUCUGCAUGUUCGGCCUGAUGCGAAAGCGAAAAAAGUCGGUGGUGCAGAAGGGCGGCGGCGUGGGCGGCGUG_______
........((((((....((((.(((((....((((((((..((((.((..(((....))).....))))))..)))))))))))))))))....)))))).......... (-24.02 = -27.08 +   3.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:32 2006