| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,308,422 – 19,308,539 |
| Length | 117 |
| Max. P | 0.771588 |
| Location | 19,308,422 – 19,308,539 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.99 |
| Mean single sequence MFE | -45.47 |
| Consensus MFE | -29.08 |
| Energy contribution | -29.92 |
| Covariance contribution | 0.83 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.771588 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19308422 117 - 23771897 GGCCUCCUGACACGGACUACAGCCGGUCGAAUAUAUCCACGUGGACCGGGAGACCACCGUGUGAUAUGUUGCCGCCGGCUGUGGCAUUCCCUAUG---AUCAUGUGGAGCUUUCCAUGGA ....((((((((.((((((((((((((.(((((((((((((.(....((....)).))))).)))))))).).)))))))))))...)))...))---.))).((((......))))))) ( -47.30) >DroVir_CAF1 87397 114 - 1 GGCGUCCUGACAUCCACUACAGCCGGUCGAAUACAUACAUGUGGAUCGAGAAACCACCGUGUGAUAUGUUGCCGCCGGCUAUGGCUUG---UACG---AGCAAAUGGAGCAAGGCCUGAG (((.(..((...((((....(((((((.(...(((((((..(((............)))..)).)))))..).)))))))...((((.---...)---)))...)))).))).))).... ( -37.20) >DroPse_CAF1 79329 120 - 1 GGCCUCCUGACACGGACUCCAGCCGGUCGAGUACAUACAUGUGGAUCGGGAGACCACCGUGUGAUAUGUUGCCGCCGGCUGUGGCAUGCCCUACGACGAGCACCUGGAGCUGGGAAUGGA .((((((......)))...(((((((.((.(((((((((..(((...((....)).)))..)).)))).)))))))))))).)))...(((..(..((......))..)..)))...... ( -45.70) >DroGri_CAF1 111964 114 - 1 GGCGUCCUGACAUCCACUACAGCCGGUCGAGUACAUACAUGUGGACCGGGAAACCACCGUGUGAUAUGUUGCCGCCGGCUGUGGCUUC---UACG---AGCAAAUGGAGCAGGGCCUGAG ((.((((((...((((.(((((((((.((.(((((((((..(((...((....)).)))..)).)))).))))))))))))))((((.---...)---)))...)))).))))))))... ( -54.40) >DroWil_CAF1 60717 108 - 1 AGCCUCCUGACACGGACUACAGCCGGUCGAGUACAUACAUGUGGAUCGAGAGACCACUGUGUGAUAUGUUGAAGCCGGCUGUGGGUUA------G---AUCAAGAGCA---GGGAUUGCA .((.(((((.....(((((((((((((((((((((((((.((((.((....)))))))))))).))).)))..)))))))))))....------.---.)).....))---)))...)). ( -43.90) >DroMoj_CAF1 101557 114 - 1 GGCGUCCUGACAUCCACUCCAGCCGGUCGAGUACAUACACGUGGAUCGGGAGACCACCGUGUGAUAUGUUGCCGCCGGCUAUGGCAUG---UAUG---AGCAAAUGGAGCGAGGCCUCAA (((.((...(((((((....((((((.((.((((((((((((((...((....)).))))))).)))).))))))))))).))).)))---)...---.((.......)))).))).... ( -44.30) >consensus GGCCUCCUGACACCCACUACAGCCGGUCGAGUACAUACAUGUGGAUCGGGAGACCACCGUGUGAUAUGUUGCCGCCGGCUGUGGCAUG___UACG___AGCAAAUGGAGCAGGGCCUGAA ................(((((((((((.(...((((((((..((...((....)).))..))).)))))..).))))))))))).................................... (-29.08 = -29.92 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:31 2006