Locus 7191

Sequence ID 3L_DroMel_CAF1
Location 19,305,875 – 19,305,969
Length 94
Max. P 0.926880
window11681

overview

Window 1

Location 19,305,875 – 19,305,969
Length 94
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 83.73
Mean single sequence MFE -13.72
Consensus MFE -11.89
Energy contribution -12.17
Covariance contribution 0.28
Combinations/Pair 1.06
Mean z-score -2.27
Structure conservation index 0.87
SVM decision value 1.18
SVM RNA-class probability 0.926880
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19305875 94 - 23771897
AUGGUAAAUAACAAUAUAAUACAGACAGCUGUGUAAAUAGUCAAACUGCGUACAGUCUACGCAUAUUUAAUUAA-AAACCGAAAAAAAAACUGAU
.((((.............((((((....))))))............((((((.....))))))...........-..)))).............. ( -14.60)
>DroSec_CAF1 139285 91 - 1
AUGGUAAAUAACAAUAUAAUGCAGACAGCUGUGUAAAUAGUCAAACUGCGUACAGUCAACGCAUAUUUAAUUAA-AAACCGAAA---AAACUAAA
.((((.............((((((...(((((....)))))....))))))...((....))............-..))))...---........ ( -12.60)
>DroSim_CAF1 155893 91 - 1
AUGGUAAAUAACAAUAUAAUGCAGACAGCUGUGUAAAUAGUCAAACUGCGUACAGUCUACGCAUAUUUAAUUAA-AAACCGAAA---CAACUAAA
.((((.............((((((....))))))............((((((.....))))))...........-..))))...---........ ( -13.60)
>DroEre_CAF1 139512 79 - 1
AUGGUAAAUAAUAAUAAAAUACAGACAGCUGUGUAAAUAGUCAAACUGCGUACAGUCUACGCAUAU-UAAUUAA-AAACAC--------------
.((.(((.(((((.....((((((....))))))............((((((.....)))))))))-)).))).-...)).-------------- ( -12.90)
>DroAna_CAF1 122936 86 - 1
AUGAUAAAUAAUAUUAAAAUACAGACAUCUGUGUAAAUAGUCAAACUGCGUACAUUCUACGCAUACUUAAUUAAUAAACCCAAA---AA------
...........((((((.((((((....))))))............((((((.....)))))).......))))))........---..------ ( -14.10)
>DroPer_CAF1 76437 89 - 1
AUGGUAAAUAAUAAUAAAAUACAGACAGCUGUGUAAAUAGUCGAAAUGCGUACACACUACGCAUAUUUAAUUAA-AA---AAAA--GAAAUAAAC
..................((((((....))))))...((((..(((((((((.....))))))).))..)))).-..---....--......... ( -14.50)
>consensus
AUGGUAAAUAACAAUAAAAUACAGACAGCUGUGUAAAUAGUCAAACUGCGUACAGUCUACGCAUAUUUAAUUAA_AAACCGAAA___AAACUAA_
....((((((........((((((....))))))............((((((.....)))))))))))).......................... (-11.89 = -12.17 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:28 2006