| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,183,237 – 2,183,337 |
| Length | 100 |
| Max. P | 0.912539 |
| Location | 2,183,237 – 2,183,337 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 94.50 |
| Mean single sequence MFE | -18.50 |
| Consensus MFE | -15.44 |
| Energy contribution | -15.20 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.83 |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.912539 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2183237 100 + 23771897 GCGCUGCUGGACUCAUUAUAAUUAACAAUUUAUAAAGCGUUAAUCCACAUACACUGGCACCAAAACCCUUUGGCUAUCCAACACAAGCACAGCUGCUGAG ..((.(((((((.(.((((((........)))))).).))).............(((..(((((....)))))....))).........)))).)).... ( -18.20) >DroSec_CAF1 235158 99 + 1 GCGCUGCUGGACUCAUUAUAAUUAACAAUUUAUAAAGCGUUAAUCCACAUACACUGGCACCAAAACCCUUUGGCUCACCAAUACAAACACAGC-GCUGAG ((((((.(((((.(.((((((........)))))).).))).............(((..(((((....)))))....))).......))))))-)).... ( -21.20) >DroSim_CAF1 235587 100 + 1 GCGCUGCUGGACUCAUUAUAAUUAACAAUUUAUAAAGCGUUAAUCCACAUACACUGGCACCAAAACCCUUUGGCUCACCAAUACAAACACAGCAGCUGAA ..((((((((((.(.((((((........)))))).).))).............(((..(((((....)))))....))).........))))))).... ( -22.80) >DroEre_CAF1 240378 100 + 1 GCGCUGCUGGACUCAUUAUAAUUAACAAUUUAUAAAGCGUUAAUCCACAUACACUCGCACCAAAACUCUUUGGCUCACCAACACAACCAUAGCUGCUGAG ((((((.(((.....((((((........)))))).(((................))).(((((....))))).............))))))).)).... ( -16.09) >DroYak_CAF1 233495 100 + 1 GCGCUGCUGGACUCAUUAUAAUUAACAAUUUAUAAAGCGUUAAUCCACAUACACUUGCACCAAAACUAUUUGGCUCACCAACACAAACAUAGCUGCUGAG ..((.(((((((.(.((((((........)))))).).)))..............((..(((((....)))))..))............)))).)).... ( -14.20) >consensus GCGCUGCUGGACUCAUUAUAAUUAACAAUUUAUAAAGCGUUAAUCCACAUACACUGGCACCAAAACCCUUUGGCUCACCAACACAAACACAGCUGCUGAG ..((.(((((((.(.((((((........)))))).).)))..................(((((....)))))................)))).)).... (-15.44 = -15.20 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:24 2006