Locus 7189

Sequence ID 3L_DroMel_CAF1
Location 19,297,224 – 19,297,327
Length 103
Max. P 0.557597
window11678

overview

Window 8

Location 19,297,224 – 19,297,327
Length 103
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 87.67
Mean single sequence MFE -36.00
Consensus MFE -27.48
Energy contribution -28.40
Covariance contribution 0.92
Combinations/Pair 1.10
Mean z-score -1.53
Structure conservation index 0.76
SVM decision value 0.05
SVM RNA-class probability 0.557597
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19297224 103 + 23771897
UCGGUUCGGUUUAGCCUAAAAGCCAGCG-GAGGCACAUGAGUUGGCCGGGCUGUUUCAUGUGGUCAUUACGUCAUGAUGCAGCUUUUGGCUU-----UGGAGUGGCACA
.............(((..((((((((..-..(((.((.....)))))(((((((.(((((((.......)).))))).))))))))))))))-----).....)))... ( -35.80)
>DroSec_CAF1 130480 103 + 1
UCGGUUCGGUUUAGCCUAAAAGCCAGUG-GAGGCACAUGAGUUGGCCGGGCUGUUUCAUGUGGUCAUUACGUCAUGAUGCAGCUUUUGGCUU-----UGGAGUGGCACA
.............(((..((((((((..-..(((.((.....)))))(((((((.(((((((.......)).))))).))))))))))))))-----).....)))... ( -35.90)
>DroEre_CAF1 130653 103 + 1
UCGGUUCGGUUUAGCCUAAAAGCCAACG-GAGGCACACGACUUGGCCGGGCUGUUUCAUGUGGUCAUUACGUCAUGAUGCAGCUUUUGGCUU-----UGGAGUGGCACA
((.(((.(((((.......)))))))).-)).((.(((..(..(((((((((((.(((((((.......)).))))).))))))..))))).-----.)..)))))... ( -38.90)
>DroYak_CAF1 163120 108 + 1
UCGGUUCAGUUUAGCCUAAAAGCCAGCG-GAGGCACAUGACUUGGCCGGGUUGUUUCAUGUGGUCAUUACGUCAUGAUGCAGCUUUUGGCUUUGGUUUGGAGUGGCACA
...(((((.(((((((..((((((((.(-(..(((((((((.((((((.((......)).))))))....)))))).)))..)).)))))))))).))))).))).)). ( -39.70)
>DroAna_CAF1 115041 91 + 1
------CGGUUUAGCUUC-CAGCCAGCGAGAGGCACAUGACUUGGCCGGGCUGGUUCAUGUGGUCAUUACGUCAUGAUGCAGCUUU-----------UGGAGUGGCCUG
------.(((...(((.(-(((..(((.....(((((((((.((((((.(........).))))))....)))))).))).))).)-----------)))))).))).. ( -29.70)
>consensus
UCGGUUCGGUUUAGCCUAAAAGCCAGCG_GAGGCACAUGACUUGGCCGGGCUGUUUCAUGUGGUCAUUACGUCAUGAUGCAGCUUUUGGCUU_____UGGAGUGGCACA
........(((...((...(((((((.....(((.((.....)))))(((((((.(((((((.......)).))))).))))))))))))))......))...)))... (-27.48 = -28.40 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:25 2006