Locus 7188

Sequence ID 3L_DroMel_CAF1
Location 19,293,489 – 19,293,581
Length 92
Max. P 0.889431
window11677

overview

Window 7

Location 19,293,489 – 19,293,581
Length 92
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 95.49
Mean single sequence MFE -29.11
Consensus MFE -25.41
Energy contribution -25.41
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.54
Structure conservation index 0.87
SVM decision value 0.96
SVM RNA-class probability 0.889431
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19293489 92 + 23771897
GAGGCAGCCCAAAUUCAGGACUCGA---AGUCUCCUGCUCCUUGGCCUCCAACGCCAUCUACAUCUGAAGUCUGCGCCACCGUGGGUGCUUACUU
..(((((.((((...(((((.....---....)))))....)))).)).....)))...........((((..(((((......)))))..)))) ( -23.20)
>DroSec_CAF1 126785 92 + 1
GAGGCAGCCCAAUUUCAGGACUCGG---AGUCUCCUGCUCCUUGGCCUCCAACGCCAUCUACAUCUGAAGUCUGCGCCUCCGUGGGUGCUUACUU
(((((.((...((((((((....((---(((.....))))).((((.......))))......))))))))..))))))).((((....)))).. ( -29.00)
>DroSim_CAF1 142382 92 + 1
GAGGCAGCCCGAUUUCAGGACUCGG---AGUCUCCUGCUCCUUGGCCUCCAACGCCAUCUACAUCUGAAGUCUGCGCCUCCGUGGGUGCUUACUU
.(((((.((((((((((((....((---(((.....))))).((((.......))))......))))))))).(((....))))))))))).... ( -32.50)
>DroEre_CAF1 126799 95 + 1
GAGGCAGCCCAAUUUCAGGACUCAGAAGAGUCUCCUGCUCCUUGGCCUCCAACGCCAUCUACAUCUGAAGUCUGCGCCUUCGUGGGUGCUUACUU
.(((((.((((......(((((((((.((((.....))))..((((.......))))......)))).))))).........))))))))).... ( -28.76)
>DroYak_CAF1 159314 91 + 1
GAGGCA-CCCAAUUUCAGGACUCGG---AGUCUCCUGCUCCUUGGCCUCCAACGCCAUCUACAUCUGAAGUCUGCGCCUUCGUGGGUGCUUACUU
.(((((-(((.((((((((....((---(((.....))))).((((.......))))......))))))))..(((....))))))))))).... ( -32.10)
>consensus
GAGGCAGCCCAAUUUCAGGACUCGG___AGUCUCCUGCUCCUUGGCCUCCAACGCCAUCUACAUCUGAAGUCUGCGCCUCCGUGGGUGCUUACUU
(((((..........(((((..(......)..))))).......)))))..................((((..(((((......)))))..)))) (-25.41 = -25.41 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:24 2006