Locus 7185

Sequence ID 3L_DroMel_CAF1
Location 19,270,562 – 19,270,654
Length 92
Max. P 0.564072
window11670

overview

Window 0

Location 19,270,562 – 19,270,654
Length 92
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 79.21
Mean single sequence MFE -22.05
Consensus MFE -11.88
Energy contribution -10.72
Covariance contribution -1.16
Combinations/Pair 1.33
Mean z-score -1.84
Structure conservation index 0.54
SVM decision value 0.06
SVM RNA-class probability 0.564072
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19270562 92 - 23771897
AUCUCAAGCGAGUGGACAAGUCAUUGGCCAUGUUAAGUGAGGCCAAAGAAAUGGCCAUCAACAACUAGU-CUACGUAGAUAUAUUACAAAAUA
...........((((((.(((..((((.(((.....))).(((((......))))).))))..))).))-))))((((.....))))...... ( -22.40)
>DroPse_CAF1 41389 88 - 1
AUCUUAGGCGCGUGGACAAGUCUUUGAUUCAAUUGGAGGCGGCCAAUGAUAUGGCUAUCAGGAACUAGAAAUACUUAGGU----UAA-AAGUA
.(((.((...(.(((....(((((..((...))..)))))(((((......))))).))).)..)))))..(((((....----...-))))) ( -19.50)
>DroSec_CAF1 99349 92 - 1
AUCUCAAGCGAGUGGACAAGUCAUUGGCCAUGUUAAGUGAGGCCAAAGAAAUGGUCAUCAACAACUAGU-CUACUUAGAUAUAUUACAAAAUA
((((.....((((((((.(((..((((.(((.....))).(((((......))))).))))..))).))-))))))))))............. ( -21.70)
>DroEre_CAF1 103642 92 - 1
AUCUUAAACGAGUGGACAAGUCUUUGGCCAGGUUAAUUGAGGCCAAGGCAAUGGCCAUCAACAACUAGU-CUACUUAGAUGUAAUACAAAAUA
((((.....((((((((.(((..((((((...........))))))(((....))).......))).))-))))))))))............. ( -25.40)
>DroYak_CAF1 129430 92 - 1
AUCUCAAGCGAGUGGACAAGUCGUUGGCCAGGUUAAGUGAGGCCAAGGAAAUGGCCAUCAGCAACUAGA-CUACUUAGAUAUAUUACAAAAUA
.......((..((((.((..((.((((((...........)))))).))..)).))))..))..((((.-....))))............... ( -23.50)
>DroPer_CAF1 41550 89 - 1
AUCUUAGGCGCGUGGACAAGUCUUUGAUUCAAUUGGAGGCGGCCAAUGAUAUGGCUAUCAGGAACUAGAAAUACUUAGGU----UAAAAAGUA
.(((.((...(.(((....(((((..((...))..)))))(((((......))))).))).)..)))))..(((((....----....))))) ( -19.80)
>consensus
AUCUCAAGCGAGUGGACAAGUCUUUGGCCAAGUUAAGUGAGGCCAAAGAAAUGGCCAUCAACAACUAGA_CUACUUAGAUAUAUUACAAAAUA
...........((((...(((..((((.((.......)).(((((......))))).))))..)))....))))................... (-11.88 = -10.72 +  -1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:18 2006