Locus 7184

Sequence ID 3L_DroMel_CAF1
Location 19,265,393 – 19,265,492
Length 99
Max. P 0.558433
window11669

overview

Window 9

Location 19,265,393 – 19,265,492
Length 99
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 75.90
Mean single sequence MFE -20.53
Consensus MFE -13.38
Energy contribution -13.52
Covariance contribution 0.14
Combinations/Pair 1.29
Mean z-score -1.15
Structure conservation index 0.65
SVM decision value 0.05
SVM RNA-class probability 0.558433
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19265393 99 - 23771897
AUAUUAU-UUCUAAUAACUUUCUUUA-CCCCUAAUCAGAUGUCCUCUCUUAACGUGCGGGAUCUGAACAAUACACGCAAGGCACAAAUGGAAUUGGUAUUU
((((((.-(((((.............-.......((((((.(((.(.(.....).).)))))))))........(....).......))))).)))))).. ( -16.60)
>DroVir_CAF1 36885 96 - 1
--UACACUUCCUAAUGCAA-GCAUU--UCUAAUGUCAGAUGUCAUCGCUUAAUGUACGGGAGCUGAACAAUACACGAAAGGCUCAAAUGGAGCUGGUCUUC
--..(((((((...(((((-((((.--(((......))).))....)))...)))).))))).))..........((..(((((.....)))))..))... ( -18.00)
>DroSec_CAF1 94205 100 - 1
AUAUUAU-UUCUAAUAACAUUCUGUAAUCCUUAACCAGAUGUCCUCCCUUAACGUGCGGGAUCUGAACAAUACCCGCAAAGCACAAAUGGAGCUGGUAUUU
.......-.........................(((((...(((..........((((((............))))))..........))).))))).... ( -20.35)
>DroSim_CAF1 105637 100 - 1
AUAUUAU-UUCUAAUAACAUUCUCUAAUCCUUAACCAGAUGUCCUCCCUUAACGUGCGGGAUCUGAACAAUACCCGCAAGGCACAAAUGGAGCUGGUAUUU
.......-.........................(((((...(((..........((((((............))))))..........))).))))).... ( -20.35)
>DroYak_CAF1 124265 99 - 1
AAUCCAU-UUCUUAUAACUACUU-UAAACUCUAACCAGAUGUCCUCCCUAAACGUGCGGGAUCUUAAUAAUACCCGCAAGGCACAAAUGGAGCUGGUAUUU
.......-...............-.........(((((...(((..........((((((............))))))..........))).))))).... ( -20.35)
>DroMoj_CAF1 43576 99 - 1
--UCCAUGUUCUAACACUCUCCAUUUCUCUUACAUCAGAUGGCCACGCUGAACGUGCGCGAUCUGAAUAACACGCGCAAGGCUCAAAUGGAGCUGGUCUUC
--.((((((....)))..((((((((........((((((.((((((.....)))).)).))))))........(....)....)))))))).)))..... ( -27.50)
>consensus
AUAUCAU_UUCUAAUAACAUUCUUUAAUCCUUAACCAGAUGUCCUCCCUUAACGUGCGGGAUCUGAACAAUACCCGCAAGGCACAAAUGGAGCUGGUAUUU
.................................(((((...(((..........((((((............))))))..........))).))))).... (-13.38 = -13.52 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:17 2006