Locus 7182

Sequence ID	3L_DroMel_CAF1
Location	19,254,700 – 19,254,792
Length	92
Max. P	0.525562

overview

Window 5

Location	19,254,700 – 19,254,792
Length	92
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	91.96
Mean single sequence MFE	-26.02
Consensus MFE	-20.04
Energy contribution	-20.80
Covariance contribution	0.76
Combinations/Pair	1.04
Mean z-score	-1.51
Structure conservation index	0.77
SVM decision value	-0.02
SVM RNA-class probability	0.525562
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19254700 92 + 23771897
GCCAGAAUUGGCCAUUCUAUGUGUUCCUAAUCAGCGGACGGGUCUUUGCAUUUGUUGGCCAAGCAUAAGAUUAGGCAACUUAUUUGUUUUCC
(((......)))..........((((((((((....(...((((...((....)).))))...)....))))))).)))............. ( -20.90)
>DroSec_CAF1 82951 92 + 1
GCCAGAAUUGGCCAUUCAAUGUGUUUCUAAUCAGCGGACGGUUCUUUGCAUUUGUUGGCCAAGCAUAAGAUUAGGCAACUAUUUUGUUUGCC
.......(((((((..(((.((((....((((.......))))....))))))).)))))))(((..(((.(((....))).)))...))). ( -23.90)
>DroSim_CAF1 89438 92 + 1
GCCAGAAUUGGCCAUUCUGUGUGUUUCUAAUCAGCGGACGGGUCUUUGCAUUUGUUGGCCAAGCAUAAGAUUAGGCAACUAAUUUGUUUGCC
.......(((((((.(((((.((((.......)))).))))).....((....)))))))))(((..(((((((....)))))))...))). ( -27.70)
>DroEre_CAF1 87318 92 + 1
GCCAGAGUUGGCCAUUCUAUGUGAUCCUAAUCAGUGGACGGGUCUUUGCAUUUGCUGGCCAAGCAUAAGAUUAGGCAACUAAUAUGUUUGCC
(((((.((.((((..(((((.((((....)))))))))..))))...)).....)))))((((((((...((((....)))))))))))).. ( -29.50)
>DroYak_CAF1 113565 92 + 1
GCCAGAAUUGGCCAUUCUACGGGAUCGUAAUCAGUGGACGGGACUUUGCAUUUGUUGGCCAAGCAUAAGAUUAGGCAACUAAUUUGUUUGCA
.......((((((..(((((..(((....))).)))))...(((.........)))))))))(((..(((((((....)))))))...))). ( -28.10)
>consensus
GCCAGAAUUGGCCAUUCUAUGUGUUCCUAAUCAGCGGACGGGUCUUUGCAUUUGUUGGCCAAGCAUAAGAUUAGGCAACUAAUUUGUUUGCC
.......(((((((.......((........))(((((......)))))......)))))))(((..(((((((....)))))))...))). (-20.04 = -20.80 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:13 2006