| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,249,502 – 19,249,653 |
| Length | 151 |
| Max. P | 0.700032 |
| Location | 19,249,502 – 19,249,619 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 86.89 |
| Mean single sequence MFE | -33.41 |
| Consensus MFE | -23.68 |
| Energy contribution | -23.24 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.71 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19249502 117 - 23771897 CCAGGAAAGGGUUCCAGAAGGAACUCCAUUCGAAGGAGUCCAAGGAGAAUCUCCUAGCGACAGAGUCCAGACGGACGCGUCCGAUGAAAGGGUUCAAGAGGAAAUUUCCAACGAUAC ...(((((...((((.....((((.((.((((..(((((((.(((((...))))).).))).(.((((....)))).).)))..)))).))))))....)))).)))))........ ( -39.70) >DroSec_CAF1 77634 117 - 1 CCAGCAAAGGGUUAUAGAAGAAACGCCAUUCGAAGGAGUUCAAGAAGAAUCCCUUAAAGACAGAGUCCAAGAGGACGCGUCCGAUGAAAGGGUUCAAGAGAAAAACUCCAACGAUAC ........(((((........))).))..(((..((((((......(((.(((((...(((...((((....))))..)))......))))))))........))))))..)))... ( -27.54) >DroEre_CAF1 82024 117 - 1 CCAGGAAAGGGUUCUAGAAGAAACCCCAUUCGAAGGAGUUCAAGAGGAAUCCCCAAAUGACAGAGUCCAAGAGGACGCGUCCGGUGAAAGGGUUCCAGAGGAAACGUCCAACGAUAC ........((((((.....).)))))...(((..(((........(((((((.((...(((...((((....))))..)))...))...)))))))...(....).)))..)))... ( -33.00) >consensus CCAGGAAAGGGUUCUAGAAGAAACCCCAUUCGAAGGAGUUCAAGAAGAAUCCCCUAAAGACAGAGUCCAAGAGGACGCGUCCGAUGAAAGGGUUCAAGAGGAAAACUCCAACGAUAC ........(((((........))).))..(((..(((((((.....((((((......(((...((((....))))..)))........))))))....)))...))))..)))... (-23.68 = -23.24 + -0.44)
| Location | 19,249,540 – 19,249,653 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 87.91 |
| Mean single sequence MFE | -30.85 |
| Consensus MFE | -25.54 |
| Energy contribution | -25.77 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.700032 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19249540 113 + 23771897 CGCGUCCGUCUGGACUCUGUCGCUAGGAGAUUCUCCUUGGACUCCUUCGAAUGGAGUUCCUUCUGGAACCCUUUCCUGGGAGCUUUCUUUUUGAACUCUGUCAUUAGGUGAUU ...((((....))))...(((((((((((...)))))..(((...((((((.(((((((((...((((....)))).)))))))))...))))))....)))....)))))). ( -35.50) >DroSec_CAF1 77672 113 + 1 CGCGUCCUCUUGGACUCUGUCUUUAAGGGAUUCUUCUUGAACUCCUUCGAAUGGCGUUUCUUCUAUAACCCUUUGCUGGGAGCUUUCUUUUUGAACUCUAUCAUUAGGUGAUU (((((((....)))).(((......((((.(((.....((((((((.((((.((.(((........)))))))))..)))))..))).....))))))).....))))))... ( -25.70) >DroEre_CAF1 82062 113 + 1 CGCGUCCUCUUGGACUCUGUCAUUUGGGGAUUCCUCUUGAACUCCUUCGAAUGGGGUUUCUUCUAGAACCCUUUCCUGGGAGCUUUCUUUUUGCACUCUUUCACUAGGUGAUU ...((((....))))...((((((((((((........((((((((..(((.(((((((......))))))))))..)))))..)))............))).))))))))). ( -31.35) >consensus CGCGUCCUCUUGGACUCUGUCAUUAGGGGAUUCUUCUUGAACUCCUUCGAAUGGAGUUUCUUCUAGAACCCUUUCCUGGGAGCUUUCUUUUUGAACUCUAUCAUUAGGUGAUU (((((((....)))).(((......((((.(((.....((((((((..(((.((.((((......)))))).)))..)))))..))).....))))))).....))))))... (-25.54 = -25.77 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:09 2006