| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,248,328 – 19,248,425 |
| Length | 97 |
| Max. P | 0.745542 |
| Location | 19,248,328 – 19,248,425 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 80.46 |
| Mean single sequence MFE | -24.80 |
| Consensus MFE | -20.19 |
| Energy contribution | -20.17 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.745542 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19248328 97 - 23771897 CUCUCCCAUGCCCAAUCCAACGACACGACACCAAGAUCUGGGAAA---------GUUUCCGGGCCUUGACGUGGUGUCUAUGUCCCAGUAAGAAAU-----CAAAUCCAAG .....................(((((.((..((((..((((((..---------..))))))..))))..)).)))))..................-----.......... ( -23.50) >DroSec_CAF1 76386 96 - 1 -CCCACCAUGCCCAAUCCAACGACACGACACCAAGAUCUGGGAAA---------GUUUCCGGGCCUUGUCGUGGUGUCUACGUCCCAGUAAGAAAU-----CAAAUCCCAG -....................(((((.((..((((..((((((..---------..))))))..))))..)).)))))(((......)))......-----.......... ( -24.80) >DroSim_CAF1 82345 96 - 1 -CCCACCAUGCCCAAUCCAACGACACGACACCAAGAUCUGGGAAA---------GUUUCCGGGCCUUGACGUGGUGUCUACGUCCCAGUAAGAAAU-----CAAAUCCCAG -....................(((((.((..((((..((((((..---------..))))))..))))..)).)))))(((......)))......-----.......... ( -24.20) >DroEre_CAF1 80852 96 - 1 -CCCUCCAUGCCCCAUCCAACGACACGACACCAAGAUCUGGGAAA---------GUUUCCGGGCCUUGACGUGGUGUCUACGUCCCAGUACGAAAU-----CAAGUCCAAG -....................(((((.((..((((..((((((..---------..))))))..))))..)).)))))..(((......)))....-----.......... ( -24.30) >DroYak_CAF1 107557 96 - 1 -CCCUCCAUGCCCAAUCCAACGACACGACACCAAGAUCUGGGAAA---------GUUUCCGGGCCUUGACGUGGUGUCUACGUCCCAGUAAGAAAU-----CAAAUCCAAG -....................(((((.((..((((..((((((..---------..))))))..))))..)).)))))(((......)))......-----.......... ( -24.20) >DroPer_CAF1 19644 100 - 1 -CCCC-----CCCCCCCCAAAGGCGCUACGCCAAUUCCUGGAAUAUAUAUCCAUAUUCCUGGGCCUUGACGUGGCGU----GUGCCAG-AUGAUAUAUACAUACAUACAAC -....-----...........(((((.((((((..(((.(((((((......))))))).)))........))))))----)))))..-...................... ( -27.80) >consensus _CCCACCAUGCCCAAUCCAACGACACGACACCAAGAUCUGGGAAA_________GUUUCCGGGCCUUGACGUGGUGUCUACGUCCCAGUAAGAAAU_____CAAAUCCAAG .....................(((((.((..((((.((((((((...........)))))))).))))..)).)))))................................. (-20.19 = -20.17 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:07 2006