Locus 7176

Sequence ID 3L_DroMel_CAF1
Location 19,240,908 – 19,241,004
Length 96
Max. P 0.698355
window11653

overview

Window 3

Location 19,240,908 – 19,241,004
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 92.71
Mean single sequence MFE -23.87
Consensus MFE -22.59
Energy contribution -22.99
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.14
Structure conservation index 0.95
SVM decision value 0.35
SVM RNA-class probability 0.698355
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19240908 96 - 23771897
CCAGGAUUCGUUUCUAUUUUCGGAGUCAGGAUCCAGAGUCGCCGCUCAGGCUGCUUUUCCCAUUGCUUUUCCUACUGCCACUGACUUUGUAGCCAA
...((((((..((((......))))...)))))).((((....)))).((((((..........((..........))..........)))))).. ( -24.25)
>DroSec_CAF1 68949 84 - 1
CCAGGAUUCGUUUCUAUUUUCGGAGUCAGGAUCCAGAGUCGCCGCUCAGGCUGCU------------UUUCCUAUUGCCACUGACUUUGUAGCCAA
...((((((..((((......))))...)))))).((((....)))).((((((.------------.....................)))))).. ( -22.55)
>DroSim_CAF1 74469 96 - 1
CCAGGAUUCGUUUCUAUUUUCGGAGUCAGGAUCCAGAGUCGCCGCUCAGGCUGCUUUUCCCACUGCUUUUCCUAUUGCCACUGACUUUGUAGCCAA
...((((((..((((......))))...)))))).((((....)))).((((((..........((..........))..........)))))).. ( -24.25)
>DroEre_CAF1 73532 96 - 1
CAAGGAUUCGUUUCUAUUUUCGGAGUCAGGAUCCAGAGUCGCCGCUCAGGCUGCUUUUCCCACAGCUUUUCCUACUGCCACUGACUUUGUAGCCAA
...((((((..((((......))))...)))))).((((....)))).((((((..........((..........))..........)))))).. ( -24.25)
>DroYak_CAF1 100378 95 - 1
CAAGGAUUCGUUUCUAUU-UCGGAGUCAGGAUCCAGAGUCGCCGCUCAGGCUGCUUUUCCCACUGCUUUUCCUACUGCCACUGACUUUGUAGCCAA
...((((((..((((...-..))))...)))))).((((....)))).((((((..........((..........))..........)))))).. ( -24.05)
>consensus
CCAGGAUUCGUUUCUAUUUUCGGAGUCAGGAUCCAGAGUCGCCGCUCAGGCUGCUUUUCCCACUGCUUUUCCUACUGCCACUGACUUUGUAGCCAA
...((((((..((((......))))...)))))).((((....)))).((((((..........((..........))..........)))))).. (-22.59 = -22.99 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:02 2006