Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,235,561 – 19,235,681 |
Length | 120 |
Max. P | 0.707931 |
Location | 19,235,561 – 19,235,681 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.17 |
Mean single sequence MFE | -34.57 |
Consensus MFE | -28.20 |
Energy contribution | -29.43 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.15 |
Mean z-score | -1.33 |
Structure conservation index | 0.82 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.707931 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19235561 120 - 23771897 GUGGUGACUCCAUUGGAGUUAUUAGAGCACGGUUGGGAGAGUACGGAAGAAUUGGUUCUGAGCUGGCAGAAGACCACAUAGUCGCUGCAUUCUUCAGUAACGCCAACUUUAAUCCGGAAA .((((((((((...)))))))))).....(((...((((....(....)..(((((.(((((...((((..(((......))).))))....)))))....)))))))))...))).... ( -35.50) >DroSim_CAF1 68252 120 - 1 GUGGUGGCUCCAAUGGAGCUAUUCGAGCACGCUUGGGAGAGUACGGAAGAAUUGGUUCUGAGCUGGCAGAAGACCACGUAGUUGCUGCAUUCUUCAGAAACACCAACUUUAAUCCGGAAA ...((((((((...))))))))(((((....))))).......(((((((.(((((((((((...((((..(((......))).))))....))))))...))))).)))..)))).... ( -35.70) >DroYak_CAF1 94328 97 - 1 GUGGAGACUCCGUUGGA-----------------------GUACGGAAGAAUUGGUUCUGAACUGGCGGAAGACCAUGUGGUCGCUGCAUUCUUCAGAAACGCCAACUUUAAUCCGAAAA ......(((((...)))-----------------------)).(((((((.(((((((((((...((((..((((....)))).))))....))))))...))))).)))..)))).... ( -32.50) >consensus GUGGUGACUCCAUUGGAG_UAUU_GAGCACG_UUGGGAGAGUACGGAAGAAUUGGUUCUGAGCUGGCAGAAGACCACGUAGUCGCUGCAUUCUUCAGAAACGCCAACUUUAAUCCGGAAA ..(((((((((...)))))))))....................(((((((.(((((((((((...((((..(((......))).))))....))))))...))))).)))..)))).... (-28.20 = -29.43 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:01 2006