Locus 7174

Sequence ID 3L_DroMel_CAF1
Location 19,235,321 – 19,235,441
Length 120
Max. P 0.833430
window11651

overview

Window 1

Location 19,235,321 – 19,235,441
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 83.01
Mean single sequence MFE -39.02
Consensus MFE -30.02
Energy contribution -31.21
Covariance contribution 1.19
Combinations/Pair 1.14
Mean z-score -1.87
Structure conservation index 0.77
SVM decision value 0.72
SVM RNA-class probability 0.833430
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19235321 120 - 23771897
AUUUCAAUGGAACUACAUGGAAGAACUCGGACAAAUCACCCUAUGCUGAGGUCCAAAACUGUGAUCCGAAUGCCGCAGGCAUGUGGAAAACUGGACCAUGGCCAGUUCUGUGCCGGCCAC
.((((.(((......))).))))...((((.((..........))))))((((((.....((..((((.(((((...))))).))))..)))))))).(((((.((.....)).))))). ( -35.90)
>DroSec_CAF1 64101 107 - 1
ACUUCAAUGGAUCUACAUGGAAGAACUCGGA-------------ACUGAGCUCCAAAACAGUGGUCCGUAUGCCGCAGGCAUGUGGAAAACUGGACAAGGGCCAGUUUUGUGCUGGCCAC
.((((.(((......))).))))..((((..-------------..))))........((((..((((((((((...))))))))))..))))......(((((((.....))))))).. ( -40.70)
>DroSim_CAF1 68013 119 - 1
ACUUUAAUGGAACUACAUGGAAGAACUCGGACAAAUCAC-CUAUGCUGAGCUCCAAAACAGUGGUCCGUAUGCCGCAGGCAUGUGGAAAACUGGACAAGGGUCAGUUCUGUGCUGGUCAC
(((...((((((((...((((....(((((.((......-...))))))).))))...((((..((((((((((...))))))))))..))))(((....)))))))))))...)))... ( -37.40)
>DroYak_CAF1 94089 119 - 1
AUUUCAACGGAACUACAUGGCAGAACUCAGACAACAG-CUCUGGGCUGAGGUCCAUAACUGUGGUCCGGAUGCCGCAGGCAUGUGGAGAACUGGACAAGAGUCAGUUCUGUGCCGGCCUC
.......(((..(((((((..........(((..(((-(.....))))..))).....(((((((......))))))).)))))))(((((((.((....)))))))))...)))..... ( -42.10)
>consensus
ACUUCAAUGGAACUACAUGGAAGAACUCGGACAAAUC_C_CUAUGCUGAGCUCCAAAACAGUGGUCCGUAUGCCGCAGGCAUGUGGAAAACUGGACAAGGGCCAGUUCUGUGCCGGCCAC
.((((.(((......))).))))..(((((...............)))))(((((.....((..((((((((((...))))))))))..)))))))...(((((((.....))))))).. (-30.02 = -31.21 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:00 2006