Locus 7172

Sequence ID 3L_DroMel_CAF1
Location 19,231,130 – 19,231,248
Length 118
Max. P 0.743638
window11648

overview

Window 8

Location 19,231,130 – 19,231,248
Length 118
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 87.26
Mean single sequence MFE -29.17
Consensus MFE -21.88
Energy contribution -22.60
Covariance contribution 0.72
Combinations/Pair 1.16
Mean z-score -1.83
Structure conservation index 0.75
SVM decision value 0.46
SVM RNA-class probability 0.743638
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19231130 118 + 23771897
AGAAUAUCUGCUGGUAUAAACAGAUGCGCAAUCUUUUGUUAUUGGCACAGUAAACAAGAGAUACAAUUGUACCCGCUUUUCGGUAAAUGUGCUUCCUUACCGCUGUUUCUGCUUUUGU
((((...(.((.((((......((.(((((((((((((((((((...)))).)))))))))).......((((........))))..))))).))..)))))).).))))........ ( -27.00)
>DroSec_CAF1 59914 118 + 1
AGAGUAUCUGCUGGUAUAAACAGAUGCGCAAUCUUUUGUUAUUGGCACAGUAAACAAAAUAUACAAUUGUGCCCGCUUUUUGGUAAAUGUUCUUCCUUACCGCUGUUUAUGCUAUUGU
...........((((((((((((..((((((....))))....((((((((..............)))))))).)).....(((((..........))))).)))))))))))).... ( -29.94)
>DroSim_CAF1 63823 118 + 1
AGAGUAUCUGCUGGUAUAAACAGAUGCGCAAUCUUUUGUUAUUGGCACAGUAAACAAGAGAUACAAUUGUGCCCGCUUUUUGGUAAAUGUUCUUCCUUACCGCUGUUUAUGCUAUUGU
...........((((((((((((..(((((((((((((((((((...)))).)))))))))).....))))).........(((((..........))))).)))))))))))).... ( -32.20)
>DroEre_CAF1 64042 115 + 1
AGAGUAUC---UGGUAUAAACAGCUGCGAUAUCUUUUGUCAUUGGUUCGGUAAACAAGAGAUUCAAUUGUGGCCGAUUUUUGGUUAAUGUUCUUCCUUACCGCUGUUGAUACUAUUGU
........---((((((.((((((...((((.....))))........(((((..(((((.........(((((((...)))))))...)))))..))))))))))).)))))).... ( -28.10)
>DroYak_CAF1 89457 112 + 1
AGAGUA-----UGGUAUAAACAGAUGCGAGAUCUUUUGUUAUUGGUUCAGUAAACAAGAGAUACAAGUGUCGCCGAUUUUU-GUUAACAUUCUUCCUUAUCGCUGUUUAUACUAUUGU
.....(-----(((((((((((...((((.((((((((((((((...)))).))))))))))(((((.(((...))).)))-))...............))))))))))))))))... ( -28.60)
>consensus
AGAGUAUCUGCUGGUAUAAACAGAUGCGCAAUCUUUUGUUAUUGGCACAGUAAACAAGAGAUACAAUUGUGCCCGCUUUUUGGUAAAUGUUCUUCCUUACCGCUGUUUAUGCUAUUGU
...........((((((((((((.......((((((((((((((...)))).))))))))))..................((((((..........)))))))))))))))))).... (-21.88 = -22.60 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:57 2006