Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,174,138 – 2,174,233 |
Length | 95 |
Max. P | 0.689651 |
Location | 2,174,138 – 2,174,233 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 82.96 |
Mean single sequence MFE | -20.90 |
Consensus MFE | -14.91 |
Energy contribution | -15.67 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.18 |
Mean z-score | -1.99 |
Structure conservation index | 0.71 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.689651 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2174138 95 - 23771897 ACAGCGGGCCGAAAGCAGCUACCAAGUUGCCCACUGGCAAUUAACAGCUAACAAGCUGGACAAAUCCCCUUCCCUUUUCCAAAACCACCUCUUUG .....((((((...((((((....))))))....))))......(((((....)))))..........................))......... ( -20.90) >DroPse_CAF1 264816 82 - 1 ACAGCAGGCCGACAG--GCUACCAGCUACCCCACUGGCAAUUAACAGCUAACAAGGAGAACGAA-CCC-CUCCCUAUCU---AACCCUU------ ..(((.((((....)--))).((((........)))).........))).....((((......-...-))))......---.......------ ( -17.00) >DroSec_CAF1 226096 93 - 1 ACAGCGGACCGAAAGCAGCUACCAAGUUGCCCACUGGCAAUUAACAGCUAACAAGCUGGACA-A-CCCGCUCCCUUUCCCAAAACCCCUCGUUUG ..(((((.(((...((((((....))))))....))).......(((((....)))))....-.-.)))))........................ ( -22.10) >DroSim_CAF1 226533 94 - 1 ACAGCGGGCCGAAAGCAGCUACCAAGUUGCCCACUGGCAAUUAACAGCUAACAAGCUGGACAAA-CCCUCUCCCUUUUCCAAAACCCCUCGUUUG ..(((((((((...((((((....))))))....))))......(((((....)))))......-.......................))))).. ( -21.10) >DroEre_CAF1 230845 92 - 1 ACAGCGGGCCAAAAGCAGCUACCAAGUUGCCCACUGGCAAUUAACAGCUAACAAGCUGGACAAA-CCUUCACCCUUU-UCAAAGCC-CCCCUUCG .....((((.(((((.........(((((((....)))))))..(((((....)))))......-........))))-)....)))-)....... ( -21.80) >DroYak_CAF1 224268 93 - 1 ACAGCGGGCCGAAAGCAGCUACCAAGUUGCCCACCGGCAAUUAACAGCUAACAAGCUGGACAAA-CCCUCACCCUUUUUGAAAGUC-CCCCUUUG .(((.((((((...((((((....))))))....))))......(((((....)))))......-.....................-..)).))) ( -22.50) >consensus ACAGCGGGCCGAAAGCAGCUACCAAGUUGCCCACUGGCAAUUAACAGCUAACAAGCUGGACAAA_CCCUCUCCCUUUUCCAAAACCCCCCCUUUG .....((((((...((((((....))))))....))))......(((((....)))))..............))..................... (-14.91 = -15.67 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:20 2006