Locus 7169

Sequence ID 3L_DroMel_CAF1
Location 19,221,717 – 19,221,837
Length 120
Max. P 0.521100
window11645

overview

Window 5

Location 19,221,717 – 19,221,837
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 93.78
Mean single sequence MFE -38.45
Consensus MFE -34.19
Energy contribution -34.13
Covariance contribution -0.05
Combinations/Pair 1.19
Mean z-score -1.17
Structure conservation index 0.89
SVM decision value -0.02
SVM RNA-class probability 0.521100
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19221717 120 + 23771897
CAUGGCUCCGGUGGUGGUGAUGGCCACCAACCGCGGCAUCACUCGUAUUAGGGGCACUAACUAUCGCAGUCCGCACGGCAUACCCAUUGAUCUACUCGAUCGCAUGAUCAUCAUACGCAC
....((((((((((((((....)))))).)))((((......))))....)))))..........((.....((..((.....))...((((.....))))))(((.....)))..)).. ( -34.50)
>DroSec_CAF1 50514 120 + 1
CAUGGCUCCGGUGGUGGUGAUGGCCACCAACCGCGGCAUCACUCGCAUUAGGGGCACCAACUAUCGCAGUCCGCACGGCAUUCCCAUUGAUCUACUCGAUCGCAUGAUCAUCAUACGCAC
....((((((((((((((....)))))).)))((((......))))....)))))..........((.....((..((.....))...((((.....))))))(((.....)))..)).. ( -36.90)
>DroSim_CAF1 54302 120 + 1
CAUGGCUCCGGUGGUGGUGAUGGCCACCAACCGCGGCAUCACUCGCAUUAGGGGCACCAACUACCGCAGUCCGCACGGCAUUCCCAUUGAUCUACUCGAUCGCAUGAUCAUCAUACGCAC
....((((((((((((((....)))))).)))((((......))))....)))))..........((.....((..((.....))...((((.....))))))(((.....)))..)).. ( -36.90)
>DroEre_CAF1 52819 120 + 1
CAUGGCCCCGGUGGUGGUGAUGGCCACCAACCGCGGCAUCACUCGCAUUAGGGGCACCAACUACCGCAGUCCCCACGGCAUUCCCAUCGAUCUACUCGAUCGCAUGAUUAUCAUACGCAC
....((((((((((((((....)))))).)))((((......))))....)))))..........((.(((.....))).....((((((((.....))))).)))..........)).. ( -41.60)
>DroYak_CAF1 80435 120 + 1
CAUGGCUCCGGUGGUGGUGAUGGCCACCAACCGCGGCAUCACUCGCAUUAGGGGCACCAACUACCGCAGUCCCCACGGCAUUCCCAUUGAUCUGCUCGAUCGCAUGAUCAUUAUACGCAC
....((((((((((((((....)))))).)))((((......))))....)))))..........((.(((.....)))........((((((((......))).)))))......)).. ( -39.40)
>DroAna_CAF1 41285 120 + 1
CAUGGCGCCCGUCGUGGUGAUGGCCACCAAUCGCGGCAUCACCCGCAUCAGGGGCACCAACUACCGCAGCCCCCACGGCAUUCCAAUCGAUCUGCUCGACCGCAUGAUCAUCAUCCGCAC
..(((.((((.(((.(((((((.((.(.....).)))))))))))....).)))).)))......((.(((.....))).........(((((((......))).)))).......)).. ( -41.40)
>consensus
CAUGGCUCCGGUGGUGGUGAUGGCCACCAACCGCGGCAUCACUCGCAUUAGGGGCACCAACUACCGCAGUCCCCACGGCAUUCCCAUUGAUCUACUCGAUCGCAUGAUCAUCAUACGCAC
....((((((((((((((....)))))).)))((((......))))....)))))..........((.(((.....))).....((((((((.....))))).)))..........)).. (-34.19 = -34.13 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:53 2006