Locus 7166

Sequence ID 3L_DroMel_CAF1
Location 19,215,389 – 19,215,482
Length 93
Max. P 0.999912
window11637

overview

Window 7

Location 19,215,389 – 19,215,482
Length 93
Sequences 5
Columns 93
Reading direction reverse
Mean pairwise identity 96.24
Mean single sequence MFE -21.74
Consensus MFE -21.62
Energy contribution -21.46
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -2.37
Structure conservation index 0.99
SVM decision value 4.51
SVM RNA-class probability 0.999912
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19215389 93 - 23771897
UUCAUCCUCCCCAUCCUUUUUCAAGGGGUGCAACAGCUGUCAGCGCCGCGCUCAAUGCGUUAAUAAUGACAGUUUUCCCAAUAUUUCUCCUUU
...........(((((((.....)))))))....((((((((.....((((.....))))......))))))))................... ( -21.60)
>DroSec_CAF1 44056 93 - 1
UUCAUCCUCUCCAUCCUUUUUGAAGGGGUGCAACAGCUGUCAGAGCCGCGCUCAAUGCGUUAAUAAUGACAGUUUCCCCAAUAUUUCUCCUUU
........................((((......((((((((.....((((.....))))......)))))))).)))).............. ( -22.40)
>DroSim_CAF1 47843 93 - 1
UUCAUCCUCUCCAUCCUUUUUCAAGGGGUGCAACAGCUGUCAGCGCCGCGCUCAAUGCGUUAAUAAUGACAGUUUUCCCAAUAUUUCUCCUUU
...........(((((((.....)))))))....((((((((.....((((.....))))......))))))))................... ( -21.60)
>DroEre_CAF1 46564 93 - 1
UUCAUCCGCUCCAUCCUUUUUCAAGGGGUGCAACAGCUGUCAGUGCCGCGCUCAAUGCGUUAAUAAUGACAGUUUUCCCAAUAUUUCUCCUUU
.......((.((..((((....)))))).))...((((((((.....((((.....))))......))))))))................... ( -22.20)
>DroYak_CAF1 72825 93 - 1
UUCAUCCUUUCCAUCCUUUUUCAAGGGGUGCAACAGCUGUCAGCGCCGCGCUCAAUGCGUUAAUAAUGACGGUUUUCCCAAUAUUUCUCCUCU
...........(((((((.....)))))))....((((((((.....((((.....))))......))))))))................... ( -20.90)
>consensus
UUCAUCCUCUCCAUCCUUUUUCAAGGGGUGCAACAGCUGUCAGCGCCGCGCUCAAUGCGUUAAUAAUGACAGUUUUCCCAAUAUUUCUCCUUU
...........(((((((.....)))))))....((((((((.....((((.....))))......))))))))................... (-21.62 = -21.46 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:46 2006