Locus 7165

Sequence ID 3L_DroMel_CAF1
Location 19,212,867 – 19,212,983
Length 116
Max. P 0.545094
window11636

overview

Window 6

Location 19,212,867 – 19,212,983
Length 116
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 87.04
Mean single sequence MFE -32.83
Consensus MFE -27.01
Energy contribution -27.43
Covariance contribution 0.42
Combinations/Pair 1.10
Mean z-score -1.71
Structure conservation index 0.82
SVM decision value 0.02
SVM RNA-class probability 0.545094
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19212867 116 - 23771897
UGCUCAUCAGCGGACAGGUUGCCAUCACGUCCGGAAGUCCC---UCUGUCCGGCUGUUUUGUGUCC-ACAUCUCAAUGGCAUCAAUAGCCACCGCUGAUUUCCUCUCUUUCUCUCCCUCU
.....(((((((((((((..((..((......))..))..)---.))))))(((((((..(((.((-(........)))))).)))))))...))))))..................... ( -33.00)
>DroSec_CAF1 41619 104 - 1
UGCUCAUCAGUGGACAGGUUGCCAUCACGUCCGGAAGUCCC---UCUGUCCGGCUGUUUUGUGUCC-ACAUCUCAAUGGCAUCAAUGGCCGCCGCUGAUUUCCUCUCU------------
.....((((((((...(((((((((.(((.(((((((....---.)).))))).)))..(((....-))).....))))))......))).)))))))).........------------ ( -31.10)
>DroSim_CAF1 45358 112 - 1
UGCUCAUCAGCGGACAGGUUGCCAUCACGUCCGGAAGUCCC---UCUGUCCGGCUGUUUUGUGUCC-ACAUCUCAAUGGCAUCAAUGGCCGCCGCUGAUUUCCUCUCUCU----CCCUCU
.....((((((((...(((((((((.(((.(((((((....---.)).))))).)))..(((....-))).....))))))......))).))))))))...........----...... ( -33.00)
>DroEre_CAF1 44083 103 - 1
UGCUCAUCAGCGGACAGGUUGCCAUCCCGUCCGGAAGUCCC---UCUGUCCGGCUGUUUUGUGUCC-UCAACUCAAUGGCAUCAAUGGCCGCCGCUGAUUUCCUC-------------CU
.....((((((((...(((((((((.(((..((((......---))))..))).((..(((.....-.)))..))))))))......))).))))))))......-------------.. ( -33.10)
>DroYak_CAF1 70517 103 - 1
UGCUCAUCAGCGGACAGGUUGCCAUCACGUCCGGAAGUCCC---UCUGUCCGGCUGUUUUGUGUCC-ACAUCUCAAUGGCUUCAAUGGCCGCCGCUGAUUUCCUC-------------CU
.....((((((((.(.((..((((..(((.(((((((....---.)).))))).)))..)).))))-..........((((.....)))))))))))))......-------------.. ( -32.70)
>DroAna_CAF1 33222 114 - 1
UGCUCAUCAACGGACAGGUUGCCGCCACGGCCGGAAGUCCCUUCUCUGU-UGGCUGUUUUGUGUCCGACAUCUCAAUGGCAUCAAUGGCAGCCGCUGAUUUCCCGUCACU----CCGA-U
..........((((..((((((((.....((((((((...))))).(((-((((........).)))))).......))).....))))))))..((((.....)))).)----))).-. ( -34.10)
>consensus
UGCUCAUCAGCGGACAGGUUGCCAUCACGUCCGGAAGUCCC___UCUGUCCGGCUGUUUUGUGUCC_ACAUCUCAAUGGCAUCAAUGGCCGCCGCUGAUUUCCUCUCU__________CU
.....((((((((...((((((((..(((.(((((((........)).))))).))).(((.(........).))))))))......))).))))))))..................... (-27.01 = -27.43 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:45 2006