Locus 7164

Sequence ID 3L_DroMel_CAF1
Location 19,212,161 – 19,212,259
Length 98
Max. P 0.573286
window11635

overview

Window 5

Location 19,212,161 – 19,212,259
Length 98
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 81.73
Mean single sequence MFE -30.04
Consensus MFE -22.07
Energy contribution -22.67
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.55
Structure conservation index 0.73
SVM decision value 0.08
SVM RNA-class probability 0.573286
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19212161 98 + 23771897
UGAACGCGAUUCGGUAUUCGCAAGGGAAAUCCUUAAAGCCCG--------------UAUAAAAUCGGGCGAAGGGUUAAGACGCUUCCCAACUCUGUGAAAAUUGCAUUUGA
.....((((((.....((((((.(((((((((((...(((((--------------........))))).))))))........))))).....))))))))))))...... ( -30.20)
>DroSec_CAF1 40938 98 + 1
UGAACGCGAUUCGGUAUUCGCAAGGGAAAUCCUUAAAGCCCG--------------GAUAAAAUCGGGCGAAGGGUUAAGACUCUUCCCAACUCUGUGGAAAUUGCAUUUGU
.....((((((.....((((((.(((...........(((((--------------(......))))))(((((((....)))))))....)))))))))))))))...... ( -30.20)
>DroSim_CAF1 44693 98 + 1
UGAACGCGAUUCGGUAUUCGCAAGGGAAAUCCUUAAAGCCCG--------------GAUAAAAUCGGGCGAAGGGUUAAGACGCUUCCCAACUCUGUGGAAAUUGCAUUUGA
.....((((((.....((((((.(((((((((((...(((((--------------(......)))))).))))))........))))).....))))))))))))...... ( -29.70)
>DroEre_CAF1 43410 111 + 1
UGAACGCGAUUCGGUAUCAGCUAGGGAAAUCCUUAAAGCCCGGAGCUCUCGAUGCGGAUAA-AUCGGGCGAAGGGUUAAGAUGCUUCCCUUUUUGGUGAAAAUUGGAUUUGA
......(((((...((((((..((((((((((((...((((((...(((......)))...-.)))))).))))))........))))))..))))))..)))))....... ( -31.90)
>DroYak_CAF1 69730 105 + 1
UGAACGCGAUUCGGUAUUCGCAGGGGAAAUCCUUAAAGCCAGGAGCUAUUCAUGCGGAUAAAAUCAGGCGAAGGGUUAAGAUGCUUCCCUAUUUUGU-------GGAUUUGA
....(((((((...(((((((((((....((((.......))))....))).)))))))).))))(((.((((.((....)).))))))).....))-------)....... ( -28.20)
>consensus
UGAACGCGAUUCGGUAUUCGCAAGGGAAAUCCUUAAAGCCCG______________GAUAAAAUCGGGCGAAGGGUUAAGACGCUUCCCAACUCUGUGAAAAUUGCAUUUGA
.....((((........))))..(((((((((((...(((((......................))))).))))))........)))))....................... (-22.07 = -22.67 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:44 2006