Locus 7163

Sequence ID 3L_DroMel_CAF1
Location 19,211,340 – 19,211,443
Length 103
Max. P 0.928688
window11634

overview

Window 4

Location 19,211,340 – 19,211,443
Length 103
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 87.16
Mean single sequence MFE -43.14
Consensus MFE -31.28
Energy contribution -33.06
Covariance contribution 1.78
Combinations/Pair 1.03
Mean z-score -2.51
Structure conservation index 0.73
SVM decision value 1.19
SVM RNA-class probability 0.928688
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19211340 103 + 23771897
UCGGUUUCUGGGUUCCGGGACUGUG------CGAG--UGCGGGAC--------UCCGGGUAUCCGGAGUCGGGUCUUUGGGGACUGCUUGGUAUCGUCAGAGACAGAUGAUAUCUUAAA
.((((..(..((..((....(((((------....--)))))(((--------(((((....)))))))).))..))..)..))))...(((((((((.......)))))))))..... ( -41.80)
>DroSec_CAF1 40137 103 + 1
UCGGUUUCUGGGUUCCGGGACUGUG------CGAG--UGCGGGAC--------UCCGGGUUUCCGGAGUCGGGUCUUUGGGGACUGCUUGGUAUCGUCAGAGACAGAUGAUAUCUUAAA
.((((..(..((..((....(((((------....--)))))(((--------(((((....)))))))).))..))..)..))))...(((((((((.......)))))))))..... ( -41.80)
>DroSim_CAF1 43890 103 + 1
UCGGUUUCUGGGUUCCGGGACUGUG------CGAG--UGCGGGAC--------UCCGGGUUUCCGGAGUCGGGUCUUUGGGGACUGCUUGGUAUCGUCAGAGACAGAUGAUAUCUUAAA
.((((..(..((..((....(((((------....--)))))(((--------(((((....)))))))).))..))..)..))))...(((((((((.......)))))))))..... ( -41.80)
>DroEre_CAF1 42604 119 + 1
UCGGUUUCUGGGUUCCGGGACUGCGGGUCUGCGGGUCUGCGGGACUCCGGGCUUCCGGGUUUCCGGAGUCGGGUCUUUGGGGACUGCUUGGUAUCGUCAGAGACAGAUGAUAUCUUAAA
.((((..(..((..((....((((((..(....)..))))))(((((((((((....)))..)))))))).))..))..)..))))...(((((((((.......)))))))))..... ( -51.60)
>DroYak_CAF1 68960 95 + 1
UCGGUUUCUGGGUUCCGGGACUGCGGGAC------------------------UCCGGGUUUCCGGAGUCGGGUCUUUGGGGACUGCUUGGUAGCGUCAGAGACAGAUGAUAUCUUGAA
((.(((((((((((((((((((....(((------------------------(((((....)))))))).))))))..))))))(((....)))..))))))).))............ ( -38.70)
>consensus
UCGGUUUCUGGGUUCCGGGACUGUG______CGAG__UGCGGGAC________UCCGGGUUUCCGGAGUCGGGUCUUUGGGGACUGCUUGGUAUCGUCAGAGACAGAUGAUAUCUUAAA
.((((..(..((.(((((..(((((((........)))))))...........(((((....))))).)))))..))..)..))))...(((((((((.......)))))))))..... (-31.28 = -33.06 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:43 2006