Locus 7162

Sequence ID 3L_DroMel_CAF1
Location 19,209,585 – 19,209,693
Length 108
Max. P 0.920323
window11633

overview

Window 3

Location 19,209,585 – 19,209,693
Length 108
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 93.45
Mean single sequence MFE -33.94
Consensus MFE -27.51
Energy contribution -27.43
Covariance contribution -0.08
Combinations/Pair 1.12
Mean z-score -2.92
Structure conservation index 0.81
SVM decision value 1.13
SVM RNA-class probability 0.920323
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19209585 108 + 23771897
CGAGGCGCGCGGGGAGCGUAGUUUGC---U-AAAAAGGAGUAAAGGAUCA--------CGACUCCUUCAAGCCCGGGCGCAAGCCAAUUAAAACAAAGGCCAAAAAACAAAUGCACUUCA
.((((.(((((((.((((.....)))---)-...(((((((...(.....--------).)))))))....))))(((....)))..........................))).)))). ( -34.90)
>DroSec_CAF1 38359 108 + 1
CGAGGCGCGCGGGGAGCGUAGUUUGC---U-AAAAAGGAGUAAAGGAUCA--------GGACUCCUUCAAGCCCGGGCGCAAGCCAAUUAAAACAAAGGCCAAAAAACAAAUGCACUUCA
.((((.(((((((.((((.....)))---)-...(((((((.........--------..)))))))....))))(((....)))..........................))).)))). ( -33.30)
>DroSim_CAF1 42394 108 + 1
CGAGGCGCGCGGGGAGCGUAGUUUGC---U-AAAAAGGAGUAAAGGAUCA--------CGACUCCUUCAAGCCCGGGCGCAAGCCAAUUAAAACAAAGGCCAAAAAACAAAUGCACUUCA
.((((.(((((((.((((.....)))---)-...(((((((...(.....--------).)))))))....))))(((....)))..........................))).)))). ( -34.90)
>DroEre_CAF1 40736 108 + 1
CGAGGCGCGCGGGGAGCGUAGUUUGC---U-AAAAAGGAGUAAAGGAUCA--------CGACUCCUUCAAGCCCGGGCGCAAGCCAAUUAAAACAAAGGCCAAAAAACAAAUGCACUUCA
.((((.(((((((.((((.....)))---)-...(((((((...(.....--------).)))))))....))))(((....)))..........................))).)))). ( -34.90)
>DroYak_CAF1 65627 108 + 1
CGAGGCGCGCGGGGAGCGUAGUUUGC---U-AAAAAGGAGUAAAGGAUCA--------CGACUCCUUCAAGCCCGGGCGCAAGCCAAUUAAAACAAAGGCCAAAAAACAAAUGCACUUCA
.((((.(((((((.((((.....)))---)-...(((((((...(.....--------).)))))))....))))(((....)))..........................))).)))). ( -34.90)
>DroAna_CAF1 28001 120 + 1
CGAGGCGAACGGGGAAUGUAGUUUUCAGCUGAGAAAGGAGUUAAGGAUCAGGACACAACGACUCCUUCAAGCCCGGGCGCAAGCCAAUUAAAACAAAAGCCAAAAAACAAAUGCACUCCA
...(((...((((.....((((.....)))).(((.((((((.................)))))))))...))))(((....))).............)))................... ( -30.73)
>consensus
CGAGGCGCGCGGGGAGCGUAGUUUGC___U_AAAAAGGAGUAAAGGAUCA________CGACUCCUUCAAGCCCGGGCGCAAGCCAAUUAAAACAAAGGCCAAAAAACAAAUGCACUUCA
.((((.(((((((((((...))))..........(((((((...................)))))))....))))(((....)))..........................))).)))). (-27.51 = -27.43 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:42 2006