Locus 7160

Sequence ID 3L_DroMel_CAF1
Location 19,207,486 – 19,207,606
Length 120
Max. P 0.613108
window11630

overview

Window 0

Location 19,207,486 – 19,207,606
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.33
Mean single sequence MFE -30.00
Consensus MFE -21.42
Energy contribution -22.30
Covariance contribution 0.88
Combinations/Pair 1.13
Mean z-score -1.72
Structure conservation index 0.71
SVM decision value 0.16
SVM RNA-class probability 0.613108
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19207486 120 - 23771897
AUUAGAACUAAGAACCAUCCAAGCGAGAGUUCAAAUUGAAGGGCAGGUCGAGAAAAUAUUUCAUGGAUCAACCUAAAAGUUUUGAGGUUAUUGGACAGUGAACUCUCGCAUACGAGUGAC
......................(((((((((((...((.......((((.((((.....))).).))))(((((..........)))))......)).)))))))))))........... ( -28.00)
>DroSec_CAF1 35799 120 - 1
AUUAGAACUUAGAACCAUCCAUGCGAGAGUUCAAAUUGAAGGGCAGGUCGAGAAAAUAUUUCAUGGAUCAGCCUAAAAGUUCUGAGGUUAGUGCACAGUGAACUCUCGCAUACGAGUGAC
...............((..((((((((((((((.......((((.((((.((((.....))).).)))).)))).......(((..((....)).))))))))))))))))..)..)).. ( -34.60)
>DroSim_CAF1 39943 120 - 1
AUUAGAACUUAGAACCAUCCAAGCGAGAGUUCAAAUUGAAGGGCAGCUCGAGAAAAUAUUUCAUGGAUCAGCCUAAAAGUUCUGAGGUUAGUGCACAGUGAACUCUCGCAUAAAAGUGAC
......................(((((((((((.......((((.(.((.((((.....))).).)).).)))).......(((..((....)).))))))))))))))........... ( -28.50)
>DroEre_CAF1 38524 103 - 1
AUUAGAACUAAAACCCAUCCGAGCGAGAGUUCAAAUUGAAGGGCAAGCCGAGAAAAUAUUUCAUGGAUCAGCCCAAAAGUUAUAAGGUUACUGCACAGUGAGC-----------------
.(((.((((...........((((....))))........((((...(((.(((.....))).)))....))))...)))).)))(.(((((....))))).)----------------- ( -23.60)
>DroYak_CAF1 63367 120 - 1
AUUAGAACUAAAACCCAUCCAAGCGUGAGUUCAAAUUGAAGGGCAAGCCGAGAAAAUAUUUCAUGGAUCAGCCCUAAAGUUUUGAGGUUAGAGUACAGUGAGCUCUCGCAUACGUGGGAC
.............(((((....(((.(((((((((((..(((((...(((.(((.....))).)))....)))))..)))).....((......))..))))))).)))....))))).. ( -35.30)
>consensus
AUUAGAACUAAGAACCAUCCAAGCGAGAGUUCAAAUUGAAGGGCAGGUCGAGAAAAUAUUUCAUGGAUCAGCCUAAAAGUUCUGAGGUUAGUGCACAGUGAACUCUCGCAUACGAGUGAC
......................(((((((((((.......((((...(((.(((.....))).)))....))))............((......))..)))))))))))........... (-21.42 = -22.30 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:39 2006