| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,170,703 – 2,170,820 |
| Length | 117 |
| Max. P | 0.588206 |
| Location | 2,170,703 – 2,170,820 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.44 |
| Mean single sequence MFE | -39.65 |
| Consensus MFE | -21.98 |
| Energy contribution | -22.82 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.588206 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2170703 117 + 23771897 UUUCCUGUUCCUCUGC-CUCAU-AUACAUCACAAUGGGUGUG-CUUUCGAGCCAGGGAAUCCACUGGCUCCUGGAGUGCUCACCCUUUCUCCACACAGAGUUGGCCCUGGCCGCAGGAUU ..((((((..(((((.-.....-............(((((.(-((((((((((((((...)).)))))))..)))).)).)))))..........)))))..(((....))))))))).. ( -43.39) >DroVir_CAF1 244217 117 + 1 UUUCCUUUUUCUGUGC-CUCAU-AUAUGCCAGUGUGGGCGUA-CUGUCCAGCCAGGCGCUGCACUGGCUGCUGGAGUGCUCACCUUUUCUCUACGCGGAGCUGUCGCUAGCCUUGGGCUU ..............((-((...-....(((((((..(.(((.-(((......)))))))..))))))).(((((.(.((((..(..........)..))))...).)))))...)))).. ( -39.60) >DroPse_CAF1 261389 117 + 1 CUUCCUCUUCCUGUGC-CUCAU-CUACGCCACCGUGGGCGUC-CUCUCCAGCCAGGCCCUCCACUGGCUGCUCGAGUGCUCGCCCUUCCUCUACACGGAGCUGGCCCUGGCCACCGGCUU ................-.....-....(((.(((((((((..-(.((((((((((........)))))))...))).)..))))).........)))).(.((((....)))).)))).. ( -42.40) >DroGri_CAF1 214515 117 + 1 UUUCCUCUUUCUGUGC-CUCAU-CUAUUGCAGUGUGGGCGUU-CUGUCCAGCCAGGCGCUGCACUGGCUUCUGGAGUGCUCACCAUUCCUCUACACGGAACUUUCGCUGGCCGUGGGCUU ..............((-(.(((-.....((...(((((.(((-((((..((((((((...)).))))))...((((((.....)))))).....))))))).)))))..)).)))))).. ( -36.60) >DroAna_CAF1 217955 117 + 1 CUUUCCGUUCCUCUGU-CUCAU-AUACGUGACCAUGGGGGUG-CUGUCGAGCCAGGCUAUUCAAUGGCUGCUGGAGUACUCCCCUUUCCUCUACACUGAGCUGGCCCUGGCCUCGGGCUU ...(((((((....((-(.(..-....).)))...(((((((-(..((.(((..((((((...))))))))).))))))))))..............)))).(((....)))..)))... ( -35.10) >DroPer_CAF1 241223 119 + 1 CUUCCUCUUCCUGUGCCCUCAUCCUACGCCACCGUGGGCGUCCCUCUCCAGCCAGGCCCUCCACUGGCUGCUCGAGUGCUCGCCCUUCCUCUACACGGAGCUGGC-CUGGCCACCGGCUU ..............(((.....((...((((.(..(((((..((((..(((((((........)))))))...))).)..))))).(((.......)))).))))-..)).....))).. ( -40.80) >consensus CUUCCUCUUCCUGUGC_CUCAU_AUACGCCACCGUGGGCGUC_CUGUCCAGCCAGGCCCUCCACUGGCUGCUGGAGUGCUCACCCUUCCUCUACACGGAGCUGGCCCUGGCCACGGGCUU ..............((.(((.....(((((......))))).......(((((((........)))))))...))).))...((....(((......)))..(((....)))...))... (-21.98 = -22.82 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:19 2006