Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,206,936 – 19,207,082 |
Length | 146 |
Max. P | 0.545182 |
Location | 19,206,936 – 19,207,042 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.08 |
Mean single sequence MFE | -36.90 |
Consensus MFE | -25.19 |
Energy contribution | -25.50 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.04 |
Mean z-score | -1.56 |
Structure conservation index | 0.68 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.526356 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19206936 106 - 23771897 UUACAAAAAGCUGCCGCAGGCAACACAUGUCUGUUGGGUAGCGGAUG--GAAGCUCCGGCCUAGCACUUUGCUUAGGAGGCUCCUUCAG----GACGCUUUCAGGACAGGAC-------- .........(((((((((((((.....)))))))..))))))(..((--((((((((((((((((.....)))....)))))......)----)).)))))))...).....-------- ( -38.00) >DroSec_CAF1 35252 94 - 1 UUACAAAAAGCUGCCGCAGGCAACACAUGUCUGUUGGGUAGCGGAUG--GAAC-UCCGGCCUAGCACUUUGCUUAGGAGGCUCCUUCA---------------GGACAGGAC-------- .........(((((((((((((.....)))))))..))))))(((.(--((.(-(((.....(((.....)))..))))..)))))).---------------.........-------- ( -32.70) >DroEre_CAF1 37924 99 - 1 UUACAAAAAGCUGCCGCAGGCAACACAUGUCUGUUGGGUAGCGGAUG--GUAGCUCCGGCCUAGCACUUUGCUUAGGAGGCUCCUUCAG------CGCUUC-----CAGGAC-------- ((((.....(((((((((((((.....)))))))..)))))).....--)))).(((.....(((.....)))..((((((.(.....)------.)))))-----).))).-------- ( -34.00) >DroAna_CAF1 25708 118 - 1 UUACAAAAAGCUGCCACAGGCAACACAUGUCUGUUAGGGAGCGGAUGUGAAAACUCCGGCCUAACACUUUGCUUAG-AGGCUCCUUUGGAGGCGAAGCUUUCAGGGGU-GUCCUUGCCUC .........(((.(((((((((.....)))))))..)).)))(((.((....)))))(((((((........))))-.(((.(((((((((((...))))))))))).-)))...))).. ( -42.90) >consensus UUACAAAAAGCUGCCGCAGGCAACACAUGUCUGUUGGGUAGCGGAUG__GAAGCUCCGGCCUAGCACUUUGCUUAGGAGGCUCCUUCAG______CGCUUU__GGACAGGAC________ .........(((((((((((((.....)))))))..))))))(((.........)))((((((((.....)))....)))))...................................... (-25.19 = -25.50 + 0.31)
Location | 19,206,964 – 19,207,082 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.35 |
Mean single sequence MFE | -25.32 |
Consensus MFE | -18.05 |
Energy contribution | -19.04 |
Covariance contribution | 0.99 |
Combinations/Pair | 1.05 |
Mean z-score | -1.67 |
Structure conservation index | 0.71 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.545182 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19206964 118 - 23771897 UAUGUAAAUAUUUCAACACAAAUUAAAAUCAAAAUUAAAAUUACAAAAAGCUGCCGCAGGCAACACAUGUCUGUUGGGUAGCGGAUG--GAAGCUCCGGCCUAGCACUUUGCUUAGGAGG .................................................(((((((((((((.....)))))))..))))))(((.(--....))))..((((((.....)).))))... ( -27.60) >DroSec_CAF1 35269 117 - 1 UAUGUAAAUAUUUCAACACAAAUUAAAAUCAAAAUUAAAAUUACAAAAAGCUGCCGCAGGCAACACAUGUCUGUUGGGUAGCGGAUG--GAAC-UCCGGCCUAGCACUUUGCUUAGGAGG ..........(((((.(.....((((........))))...........(((((((((((((.....)))))))..)))))).).))--)))(-(((.....(((.....)))..)))). ( -27.60) >DroSim_CAF1 39439 91 - 1 UAUGUAAAUAUUUCAACACAAAUUAAAAUCAAAAUUAAAAUUACAAAAAGCUGCCGCAGGCAACACAUGUCUGUUGGGUAGCGGAUG--GAAG--------------------------- ..........(((((.(.....((((........))))...........(((((((((((((.....)))))))..)))))).).))--))).--------------------------- ( -19.20) >DroEre_CAF1 37945 118 - 1 UAUGUAAAUAUUUCAACACAAAUUAAAAUCAAAAUUAAAAUUACAAAAAGCUGCCGCAGGCAACACAUGUCUGUUGGGUAGCGGAUG--GUAGCUCCGGCCUAGCACUUUGCUUAGGAGG ........................................((((.....(((((((((((((.....)))))))..)))))).....--))))((((.....(((.....)))..)))). ( -29.00) >DroAna_CAF1 25747 119 - 1 UAUGUAAAUAUUUCAACACAAAUUAAAAUCAAAAUUAAAAUUACAAAAAGCUGCCACAGGCAACACAUGUCUGUUAGGGAGCGGAUGUGAAAACUCCGGCCUAACACUUUGCUUAG-AGG ...(((((.........................................(((.(((((((((.....)))))))..)).)))(((.((....)))))..........)))))....-... ( -23.20) >consensus UAUGUAAAUAUUUCAACACAAAUUAAAAUCAAAAUUAAAAUUACAAAAAGCUGCCGCAGGCAACACAUGUCUGUUGGGUAGCGGAUG__GAAGCUCCGGCCUAGCACUUUGCUUAGGAGG .................................................(((((((((((((.....)))))))..))))))...........((((.....(((.....)))..)))). (-18.05 = -19.04 + 0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:38 2006