Locus 7157

Sequence ID 3L_DroMel_CAF1
Location 19,205,763 – 19,205,873
Length 110
Max. P 0.994226
window11623

overview

Window 3

Location 19,205,763 – 19,205,873
Length 110
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 95.98
Mean single sequence MFE -32.71
Consensus MFE -30.73
Energy contribution -30.85
Covariance contribution 0.12
Combinations/Pair 1.09
Mean z-score -1.78
Structure conservation index 0.94
SVM decision value 2.46
SVM RNA-class probability 0.994226
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19205763 110 - 23771897
ACAAAAAAAGUUAAGGGUUUUUGGCCAGCCCAGUGCUGCGUGGAAAUCGGUUCAACGACUUUUCGUAUGCACUGUAUAUGCGGCUGGUCUAAGGUCGUAAAUUAUGGUUU
........((((.(.(..(((.((((((((((((((((((.((((.(((......))).)))))))).)))))).......)))))))).)))..).).))))....... ( -35.41)
>DroSec_CAF1 34114 109 - 1
ACAAA-AAAGUUAAGGGUUUUUGGUCAGCCCAGUGCUGCGUGGAAAUCGGUUCAACGACUUUUCGUAUGCACUGUAUAUGCGGCUGGUCUAAGGUCAUAAAUUAUGGUUU
.....-..((((...(..(((.(..(((((((((((((((.((((.(((......))).)))))))).)))))).......)))))..).)))..)...))))....... ( -31.31)
>DroSim_CAF1 38440 109 - 1
GCAAA-AAAGUUAAGGGUUUUUGGCCAGCCCAGUGCUGCGUGGAAAUCGGUUCAACAACUUUUCGUAUGCACUGUAUAUGCGGCUGGUCUAAGGUCGUAAAUUAUGGUUU
.....-..((((.(.(..(((.((((((((((((((((((((((((..((((....)))))))).))))))..)))).)).)))))))).)))..).).))))....... ( -31.10)
>DroEre_CAF1 36804 109 - 1
ACAAA-AAAGUUAAGGGUUUUUGGCCAGCCCAGUGCUGCGUGGAAUUCGGUUCAACGACUUUUCGUAUGCACUGUAUAUGCAGCCGGUCUAAGGUCGUAAAUUAUGGUUU
.....-.........(((((.(((((((.((.(.((((((((.....((((.((((((....)))).)).))))..))))))))))).))..))))).)))))....... ( -28.70)
>DroYak_CAF1 61790 109 - 1
ACAUA-AAAGUUAAGGAUUUUUGGCCAGUCCAGUGCUGCGUGGAAAUCGGUUCAACGACUUUUCGUAUGCACUGUAUAUGCGGCUGGUCUAAGGUCGUAAAUUAUGGUUU
.((((-(...(((..((((((.((((((((((((((((((.((((.(((......))).)))))))).)))))).......)))))))).)))))).))).))))).... ( -37.01)
>consensus
ACAAA_AAAGUUAAGGGUUUUUGGCCAGCCCAGUGCUGCGUGGAAAUCGGUUCAACGACUUUUCGUAUGCACUGUAUAUGCGGCUGGUCUAAGGUCGUAAAUUAUGGUUU
........((((.(.((..((.((((((((((((((((((.((((.(((......))).)))))))).)))))).......)))))))).))..)).).))))....... (-30.73 = -30.85 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:33 2006