Locus 7155

Sequence ID 3L_DroMel_CAF1
Location 19,203,413 – 19,203,507
Length 94
Max. P 0.889308
window11619

overview

Window 9

Location 19,203,413 – 19,203,507
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 96.91
Mean single sequence MFE -31.02
Consensus MFE -28.65
Energy contribution -28.93
Covariance contribution 0.28
Combinations/Pair 1.04
Mean z-score -1.42
Structure conservation index 0.92
SVM decision value 0.96
SVM RNA-class probability 0.889308
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19203413 94 - 23771897
AUUCGACCCAUCAGGUAACUCCUCCAUUUGGCCACUUGGGCUUUUUGCCUGACCGCAUUCAGUUGGUGGAGACACCGGCCGGCAGUUCUUGGCC
..........(((((.((((((.......((((..(..(((.....)))..)............((((....)))))))))).))))))))).. ( -30.91)
>DroSec_CAF1 31737 94 - 1
AUUCGACCCAUCAGGUAACUCCUCCAUUUGGCCACUUGGGCUUUUUGCCUGACCGCAUUCAGUUGGUGGAGACACCGGCCGGCAGCUCUUGGCC
.....(((.....))).............(((((...(((((....((((((......)))(((((((....))))))).)))))))).))))) ( -32.00)
>DroSim_CAF1 36064 94 - 1
AUUCGACCCAUCAGGUAACUCCUCCAUUUGGCCACUUGGGCUUUUUGCCUGACCGCAUUCAGUUGGUGGAGACACCGGCCGGCAGUUCUUGGCC
..........(((((.((((((.......((((..(..(((.....)))..)............((((....)))))))))).))))))))).. ( -30.91)
>DroEre_CAF1 34511 94 - 1
AUUCGACCCAUCAGGUAACUCCUCCAUUUGGCCACUUGGGCUUUUGGCCUAACCGCAUUCAUUUGGUGGAGACACCGGCCGGCAGUUCUUGGCC
.............(((..((((.(((..((((...((((((.....))))))..))...))..))).))))..)))((((((......)))))) ( -31.40)
>DroYak_CAF1 59385 94 - 1
AUUCGACCCAUCAGGUAACUCCUCCAUUUGGCCACUUGGGCUUCUGGCCUUACCGCAUUCAGUUGGUGAAGACACCGGCCGGCAGUUCUUGGCC
.....(((.....))).............(((((...(((((.((((((.....((.....)).((((....)))))))))).))))).))))) ( -29.90)
>consensus
AUUCGACCCAUCAGGUAACUCCUCCAUUUGGCCACUUGGGCUUUUUGCCUGACCGCAUUCAGUUGGUGGAGACACCGGCCGGCAGUUCUUGGCC
..........(((((.((((((.......((((..((((((.....))))))............((((....)))))))))).))))))))).. (-28.65 = -28.93 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:29 2006