| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,203,283 – 19,203,388 |
| Length | 105 |
| Max. P | 0.549112 |
| Location | 19,203,283 – 19,203,388 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.75 |
| Mean single sequence MFE | -32.52 |
| Consensus MFE | -17.07 |
| Energy contribution | -18.18 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.549112 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19203283 105 + 23771897 UCUCUCAAGUACACAAAAACAAAAGCCUGGCUAACAGCCCAGAAGGGGGUUAGUCCUCGUGAGGG---------------GAGGGGGCCAGAAGCACCCACCGUGCCGAUGUAGAAUAUG .........(((((............((((((..((((((......)))))..(((((....)))---------------)))..))))))..((((.....)))).).))))....... ( -34.10) >DroSec_CAF1 31607 105 + 1 UCUCUCAAGUACACAAAAACAAAAGCCUGGCUAACAGCCCAGAAGGGGGUUAGUCCUCGUGAGGG---------------GAGGGGGCCAGAAGCACCCACCGUGCCGAUGUAGUAUAUG ........(((((((...........((((((..((((((......)))))..(((((....)))---------------)))..))))))..((((.....))))...))).))))... ( -36.20) >DroSim_CAF1 35934 105 + 1 UCUCUCAAGUACACAAAAACAAAAGCCUGGCUAACAGCCCAGAAGGGGGUUAGUCCUCGAGAGGG---------------GAGGGGGCCAGAAGCACCCACCGUGCCGAUGUAGUAUAUG ........(((((((...........((((((..((((((......)))))..(((((....)))---------------)))..))))))..((((.....))))...))).))))... ( -35.20) >DroEre_CAF1 34401 85 + 1 UCUCUCAAGUACACAAAAACAAAAGCCUGGCUAACAGCCCA-AAGGGGGUAAGUUCUCGAGAGGG---------------GAGGGGGCUAGGAGC-------------------UGUAUG ..................(((....(((((((..(.((((.-....))))...(((((....)))---------------)))..)))))))...-------------------)))... ( -25.60) >DroYak_CAF1 59275 85 + 1 UCUCUCAAGUACACAAAAACAAAAGCCUGGCUAACAGCCCA-AAGGGGGUUACUUCUCGAGAGGG---------------GAGGGGGUCGGGAGC-------------------UGUAUG ..................(((....(((((((...(((((.-....))))).((((((....)))---------------)))..)))))))...-------------------)))... ( -26.30) >DroAna_CAF1 22584 109 + 1 UCUCGCAAGUACACAAAAACAAAAGCCUGGCUAACUGCCCA-AAGGGGGUAAGUCUGCGAGAGGGCCAAGAGAUGGGUGGCAGGGGGC---AACCACCCACCGUGCGGGUGUA------- ...(((..((((............((((.((..(((((((.-....)))).)))..))....)))).........(((((....((..---..))..)))))))))..)))..------- ( -37.70) >consensus UCUCUCAAGUACACAAAAACAAAAGCCUGGCUAACAGCCCA_AAGGGGGUUAGUCCUCGAGAGGG_______________GAGGGGGCCAGAAGCACCCACCGUGCCGAUGUA_UAUAUG ..........................((((((..((((((......)))))....(((....))).................)..))))))............................. (-17.07 = -18.18 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:28 2006