| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,199,903 – 19,199,998 |
| Length | 95 |
| Max. P | 0.947997 |
| Location | 19,199,903 – 19,199,998 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.56 |
| Mean single sequence MFE | -23.48 |
| Consensus MFE | -22.12 |
| Energy contribution | -22.15 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.94 |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.947997 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19199903 95 - 23771897 --------GAGUACUUCUUGCAUUUGUGU---GAGCGCAGCUGUUGAUGAAAGUGAAGGAAAAUCAUUCACAUUUUCUACGGGAAAAUGGGAAAGACAACAACAGC-------------- --------........((..((....)).---.))....(((((((.((...(((((.(.....).))))).(((((....)))))..........)).)))))))-------------- ( -23.40) >DroSec_CAF1 28283 103 - 1 ---GAAAAGAGUACUUCUUGCAUUUGUGUGGUGAGCGCAGCAGUUGAUGAAAGUGAAGGAAAAUCAUUCACAUUUUCUACGGGAAAAUGGGAAAAACAACAACAGC-------------- ---.......(..(((.(..((....))..).)))..).((.((((.((...(((((.(.....).))))).(((((....)))))..........)).)))).))-------------- ( -21.00) >DroSim_CAF1 32646 100 - 1 ---GAAAAGAGUACAUCUUGCAUUUGUGU---GAGCGCAGCUGUUGAUGAAAGUGAAGGAAAAUCAUUCACAUUUUCUACGGGAAAAUGGGAAAAACAACAACAGC-------------- ---...((((.....)))).....((((.---...))))(((((((.((...(((((.(.....).))))).(((((....)))))..........)).)))))))-------------- ( -24.30) >DroEre_CAF1 31470 99 - 1 ---GAAAAGAGUACUUCUUGCAUUUGUGU---GAGCGCAGCUGUUGAUGAAAGUGAAGGAAAAUCAUUCACAUUUUCUACGGGAAAAUGGGAA-AACAACAACAGC-------------- ---.............((..((....)).---.))....(((((((.((...(((((.(.....).))))).(((((....))))).......-..)).)))))))-------------- ( -23.40) >DroYak_CAF1 56317 100 - 1 ---AAAAAGAGUACUUCUUGCACUUGUGU---GAGCGCAGCUGUUGAUGAAAGUGAAGGAAAAUCAUUCACAUUUUCUACGGGAAAAUGGGAAAAACAACAACAGC-------------- ---...............(((.(((....---))).)))(((((((.((...(((((.(.....).))))).(((((....)))))..........)).)))))))-------------- ( -24.70) >DroAna_CAF1 21385 117 - 1 UAGAAAAAGAAUAAAACUUCCAUUUGUGU---GAGCGCAGCUGUUGAUGAAAGUGAAGGAAAAUCAUUCACAUUUUCUGGGGGAAAAUGCGAAAAAUAACAACAGCAAAAUACACUCGCA ..........................(((---(((.(..(((((((((....))............(((.(((((((.....))))))).)))......)))))))......).)))))) ( -24.10) >consensus ___GAAAAGAGUACUUCUUGCAUUUGUGU___GAGCGCAGCUGUUGAUGAAAGUGAAGGAAAAUCAUUCACAUUUUCUACGGGAAAAUGGGAAAAACAACAACAGC______________ ........................(((((.....)))))(((((((.((...(((((.(.....).))))).(((((....)))))..........)).))))))).............. (-22.12 = -22.15 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:27 2006