Locus 7152

Sequence ID 3L_DroMel_CAF1
Location 19,199,754 – 19,199,868
Length 114
Max. P 0.981033
window11616

overview

Window 6

Location 19,199,754 – 19,199,868
Length 114
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 97.38
Mean single sequence MFE -27.32
Consensus MFE -25.22
Energy contribution -25.62
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.76
Structure conservation index 0.92
SVM decision value 1.88
SVM RNA-class probability 0.981033
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19199754 114 - 23771897
CAGAGAGCUAA-ACUCAGACGACGCCAAGUUCUUUUUUUCCGCUUUUCCGUUGUUUGCAUUUUAUUUUUGUUUUCUGUUGUGUUUUUCGCACACAGGGAGGAAAACUCAGCCACU
..(((......-...(((((((((..((((...........))))...)))))))))........((((.((..((((.((((.....))))))))..)).)))))))....... ( -26.80)
>DroSec_CAF1 28134 114 - 1
CAGAGAGCUAA-ACUCAGACGACACCAAGUUCUUUUUUUCCGCUUUUCCGUUGUUUGCAUUUUAUUUUUGUUUUCUGUUGUGUUUUUCGCACACAGGGAGGAAAACUCAGCCACU
..(((......-...((((((((...((((...........))))....))))))))........((((.((..((((.((((.....))))))))..)).)))))))....... ( -24.00)
>DroSim_CAF1 32497 114 - 1
CAGAGAGCUAA-ACUCAGACGACGCCAAGUUCUUUUUUUCCGCUUUUCCGUUGUUUGCAUUUUAUUUUUGUUUUCUGUUGUGUUUUUCGCACACAGGGAGGAAAACUCAGCCACU
..(((......-...(((((((((..((((...........))))...)))))))))........((((.((..((((.((((.....))))))))..)).)))))))....... ( -26.80)
>DroEre_CAF1 31320 115 - 1
CAGAGAGCUAAAACUCAGACGACGCCAAGUUCUUUUUUUUCGCUUUUCCGUUGUUUGCAUUUUAUUUUUGUUUUCUGUUGUGUUUUUCGCACACAGGGAGGAAAACUCAGCUCCU
.((.(((((((((..(((((((((..((((...........))))...)))))))))..))))..((((.((..((((.((((.....))))))))..)).))))...))))))) ( -31.60)
>DroYak_CAF1 56167 115 - 1
CAGAGAGCUAAAACUCAGACGACGCCAAGUUCUUUUUUUCCGCUUUUCCGUUGUUUGCAUUUUAUUUUUGUUUUCUGUUGUGUUUUUAUCACACAGGGAGGAAAACUCAGCCACU
..(((...(((((..(((((((((..((((...........))))...)))))))))..))))).((((.((..((((.(((.......)))))))..)).)))))))....... ( -27.40)
>consensus
CAGAGAGCUAA_ACUCAGACGACGCCAAGUUCUUUUUUUCCGCUUUUCCGUUGUUUGCAUUUUAUUUUUGUUUUCUGUUGUGUUUUUCGCACACAGGGAGGAAAACUCAGCCACU
..(((..........(((((((((..((((...........))))...)))))))))........((((.((..((((.((((.....))))))))..)).)))))))....... (-25.22 = -25.62 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:26 2006