Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,166,891 – 2,167,028 |
Length | 137 |
Max. P | 0.743001 |
Location | 2,166,891 – 2,166,991 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 80.77 |
Mean single sequence MFE | -27.63 |
Consensus MFE | -16.99 |
Energy contribution | -16.77 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.29 |
Mean z-score | -1.53 |
Structure conservation index | 0.61 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2166891 100 - 23771897 GCAAAUUGCCUGCGGGCAGAGCGGUCGGCUGCGGGGGAAAUCAUGAAAAAUCGUUAAUUGUGCAAAGUGCUGGACGUUUUUCAUUAAAGUUUUCCCCAG-C ((...(((((....))))).((((....))))(((((((((.((((((((.((((....(..(...)..)..))))))))))))....))))))))).)-) ( -35.90) >DroPse_CAF1 257008 98 - 1 GCAAAUUGCCUG--ACCAGCGUGAACGAGGAGGAGAAAAAUCAUGAAAAAUCGUUAAUUGUGCAAAGUGCUCGACGUUUUUCAUUAAAGUUUUCCUUUG-C ((((........--.((..((....)).))(((((((.....((((((((.((((....(..(...)..)..)))))))))))).....))))))))))-) ( -22.80) >DroEre_CAF1 223693 99 - 1 GCAAAUUGCCUGCGGGCAGGGCGGUCGGCUG-GGGGGAAAUCAUGAAAAAUCGUUAAUUGUGCAAAGUGCUGGACGUUUUUCAUUAAAGUUUUCCCUCG-G ((...(((((....))))).))......(((-(((((((((.((((((((.((((....(..(...)..)..))))))))))))....)))))))))))-) ( -35.50) >DroWil_CAF1 270134 97 - 1 GCAAAUUGCCUUUUGCCUGGAAGGGAUGGAGUGAAAAAAAUCAUGAAAAAUCGUUAAUUGUGUAAAGUGCUGGACGUUUUUCAUUAAAGUUUUCUCU---- ........((((((....)))))).....((.(((((.....((((((((.((((.(((......)))....)))))))))))).....))))).))---- ( -18.30) >DroAna_CAF1 214605 96 - 1 GCAAAUUGCCUGCGGGCAGUGCGGGU-----CGGAGAAAAUCAUGAAAAAUCGUUAAUUGUGCAAAGUGCUGGACGUUUUUCAUUAAAGUUUCCCUCGCCU ....((((((....))))))(((((.-----.(((((.....((((((((.((((....(..(...)..)..)))))))))))).....)))))))))).. ( -30.50) >DroPer_CAF1 236652 98 - 1 GCAAAUUGCCUG--ACCAGCGUGAACGAGGAGGAGAAAAAUCAUGAAAAAUCGUUAAUUGUGCAAAGUGCUCGACGUUUUUCAUUAAAGUUUUCCUUUG-C ((((........--.((..((....)).))(((((((.....((((((((.((((....(..(...)..)..)))))))))))).....))))))))))-) ( -22.80) >consensus GCAAAUUGCCUGCGGCCAGCGCGGACGGGGGCGAGAAAAAUCAUGAAAAAUCGUUAAUUGUGCAAAGUGCUGGACGUUUUUCAUUAAAGUUUUCCCUUG_C .....(((((((....))).))))........(((((((...((((((((.((((....(..(...)..)..)))))))))))).....)))))))..... (-16.99 = -16.77 + -0.22)
Location | 2,166,915 – 2,167,028 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 79.31 |
Mean single sequence MFE | -25.65 |
Consensus MFE | -19.67 |
Energy contribution | -21.17 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.28 |
Structure conservation index | 0.77 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.743001 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2166915 113 + 23771897 -CGUCCAGCACUUUGCACAAUUAACGAUUUUUCAUGAUUUCCCCCGCAGCCGACCGCUCUGCCCGCAGGCAAUUUGCAUAAAUCAGUGCAAAGUAUCUGUGACACAUGGAGA--GC -.((((((.(((((((((.......((....)).((((((.....(((((.....))..((((....))))...)))..)))))))))))))))..))).))).........--.. ( -30.10) >DroVir_CAF1 240641 98 + 1 GCGUCCAGCACUUGGCACAAUUAACGAUUUUUCAUGAUUUCAGUC----------------CAUGCAAGCAAUUUGCAUAAAUCAGUGCAAAGUAUCUGUGACAACGCAAAA--GA ..((((((.((((.((((.......((....)).((((((.....----------------.(((((((...))))))))))))))))).))))..))).))).........--.. ( -22.90) >DroPse_CAF1 257032 113 + 1 -CGUCGAGCACUUUGCACAAUUAACGAUUUUUCAUGAUUUUUCUCCUCCUCGUUCACGCUGGU--CAGGCAAUUUGCAUAAAUCAGUGCAAAGUAUCUGUGACACAUGGAGAGAGC -.((((.((.....)).........((....)).))))....(((((((..(((((((((...--..)))..(((((((......)))))))......)))).))..)))).))). ( -26.30) >DroWil_CAF1 270155 113 + 1 -CGUCCAGCACUUUACACAAUUAACGAUUUUUCAUGAUUUUUUUCACUCCAUCCCUUCCAGGCAAAAGGCAAUUUGCAUAAAUCAGUGCAAAGUAUCUGUGACACAUGACUA--AA -.((((((.(((((.(((.......((....)).((((((.....................(((((......)))))..))))))))).)))))..))).))).........--.. ( -18.70) >DroAna_CAF1 214630 108 + 1 -CGUCCAGCACUUUGCACAAUUAACGAUUUUUCAUGAUUUUCUCCG-----ACCCGCACUGCCCGCAGGCAAUUUGCAUAAAUCAGUGCAAAGUAUCUGUGACACAUGGAGA--GC -.((((((.(((((((((.......((....)).((((((....((-----(...((.(((....)))))...)))...)))))))))))))))..))).))).........--.. ( -29.60) >DroPer_CAF1 236676 113 + 1 -CGUCGAGCACUUUGCACAAUUAACGAUUUUUCAUGAUUUUUCUCCUCCUCGUUCACGCUGGU--CAGGCAAUUUGCAUAAAUCAGUGCAAAGUAUCUGUGACACAUGGAGAGAGC -.((((.((.....)).........((....)).))))....(((((((..(((((((((...--..)))..(((((((......)))))))......)))).))..)))).))). ( -26.30) >consensus _CGUCCAGCACUUUGCACAAUUAACGAUUUUUCAUGAUUUUUCUCC__C_CGCCCACGCUGCC_GCAGGCAAUUUGCAUAAAUCAGUGCAAAGUAUCUGUGACACAUGGAGA__GC ..((((((.(((((((((.......((....)).((((((..................(((....)))((.....))..)))))))))))))))..))).)))............. (-19.67 = -21.17 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:18 2006