Locus 7147

Sequence ID 3L_DroMel_CAF1
Location 19,192,986 – 19,193,083
Length 97
Max. P 0.651074
window11604

overview

Window 4

Location 19,192,986 – 19,193,083
Length 97
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.18
Mean single sequence MFE -23.84
Consensus MFE -11.60
Energy contribution -13.32
Covariance contribution 1.72
Combinations/Pair 1.13
Mean z-score -1.83
Structure conservation index 0.49
SVM decision value 0.25
SVM RNA-class probability 0.651074
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19192986 97 - 23771897
AAAUG------CCCCUCGAAUGUUGGACCUCCUUGAGCACCAUAAUUAUUUCACUCUGAUCCGCUCAUUAUCAACCCCAAAA-GCGAGGGAAAGAUCC----------------CUACAU
.....------.((((((....((((.......(((((........................))))).........))))..-.))))))........----------------...... ( -20.05)
>DroSec_CAF1 21329 96 - 1
AAAUG------CCCCUCGAUUGUGGGACCUCCUUGAGCACCAUAAUUAUUUCACUCUGAUUCGCUCAUUAUCAACCCCAAAA-GCGAGGGAACGAUC-----------------CUACAU
.....------.((((((....((((.......(((((.....(((((........))))).)))))........))))...-.)))))).......-----------------...... ( -23.66)
>DroSim_CAF1 25629 97 - 1
AAAUG------CCCCUCGAUUGUGGGACCUCCUUGAGCACCAUAAUUAUUUCACUCUGAUCCGCUCAUUAUCAACCCCAAAA-GCAAGGGAACGAUCC----------------CUACAU
...((------(.....((((((((...(((...)))..)))))))).........((((.........)))).........-)))(((((....)))----------------)).... ( -17.60)
>DroEre_CAF1 24289 118 - 1
CAAUGCAAGCGCCCUGCGAUUGUGGGACCUCCUUGAGCACCAUAAUUAUUACACUCCGAUCCGCUCAUUAUCAACCCCAAAAAGCGGGCA-AAGAUCCCCGUA-UUGCGUGGUCCUACAU
...((((.......))))..(((((((((.(..(((((........................)))))................(((((..-......))))).-....).))))))))). ( -29.26)
>DroYak_CAF1 49197 118 - 1
AAAUGCAAGUGCCCUGCGAUUGUGGGACCUCCUUGAGCAGCAUAAUUAUUUCACUCCGAUCCGCUCAUUAUCAACCCCAAAAAGCGAGGG-AAGAUCCCCGUC-CUGCGUGGUCCUACAU
...((((.......))))..(((((((((.(..(((((........................)))))................(((.(((-.....)))))).-....).))))))))). ( -29.56)
>DroAna_CAF1 14165 106 - 1
--AUC------CCCCUUAGGAGUAGGACCUCCUUGAACAGCACAAUUAUUUGACGCUGAUCCCCUCAUUAUGCACCCCUAAA-AAAAG-----UAUCCCCAUAAUUGCAUAGUCCUACAU
--.((------(......)))(((((((......((.((((.(((....)))..)))).)).......((((((........-.....-----............))))))))))))).. ( -22.91)
>consensus
AAAUG______CCCCUCGAUUGUGGGACCUCCUUGAGCACCAUAAUUAUUUCACUCUGAUCCGCUCAUUAUCAACCCCAAAA_GCGAGGG_AAGAUCC________________CUACAU
............((((((....((((.......(((((........................)))))........)))).....)))))).............................. (-11.60 = -13.32 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:15 2006