| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,192,763 – 19,192,883 |
| Length | 120 |
| Max. P | 0.862288 |
| Location | 19,192,763 – 19,192,883 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.61 |
| Mean single sequence MFE | -32.10 |
| Consensus MFE | -27.41 |
| Energy contribution | -27.63 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.862288 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19192763 120 - 23771897 CAAUCUUUAUUAAUCAAUUAAGCGGGUGUAGGAGUAAAUGUGUCUUUGCGUUGGCUCCUUUCGCAGCUCGGAUGCUGUAAGUAAUUAAAUUAAAAUGCGAGCAUGUGUUUUUUCGUUCGU .....................(((..((.((((((.(((((......))))).))))))..(((((((((.((....(((....))).......)).))))).))))......))..))) ( -30.60) >DroSec_CAF1 21111 120 - 1 CAAUCUUUAUUAAUCAAUUAAGCGGAUGUAGGAGUAAAUGUGUCUUCGCGUUGGCUCCUUUCGCAGCUCGGAUGCUGUAAGUAAUUAAAUUAAAAUUCGAGCAUGUGUUUUUUCGUUCGU .....................(((((((.((((((.((((((....)))))).))))))..((((((((((((....(((....))).......)))))))).))))......))))))) ( -35.50) >DroSim_CAF1 25411 120 - 1 CAAUCUUUAUUAAUCAAUUAAGCGGAUGUAGGAGUAAAUGUGUCUUCGCGUUGGCUCCUUUCGCAGCUCGGAUGCUGUAAGUAAUUAAAUUAAAAUGCGAGCAUGUGUUUUUUCGUUCGU .....................(((((((.((((((.((((((....)))))).))))))..(((((((((.((....(((....))).......)).))))).))))......))))))) ( -33.70) >DroEre_CAF1 24080 120 - 1 CAAUCUUUAUUAAUCAAUUAAGCGGAUGUAGGAGUAAAUGUGUCUUCGCGUUGGCUCCUUUCGCAGCUCGGAUGCUGUAAGUAAUUAAAUUAAAAUGCGAGCAUGUGUUUUUUCGUUCGU .....................(((((((.((((((.((((((....)))))).))))))..(((((((((.((....(((....))).......)).))))).))))......))))))) ( -33.70) >DroYak_CAF1 48988 120 - 1 CAAUCUUUAUUAAUCAAUUAAGCGGAUGUAGGAGUAAAUGUGUCUUCGCGUUGGCUCCUUUCGCAGCUCGGAUGCUGUAAGUAAUUAAAUUAAAAUGCGAGCAUGUGUUUUUUCGUUCGC .....................(((((((.((((((.((((((....)))))).))))))..(((((((((.((....(((....))).......)).))))).))))......))))))) ( -35.00) >DroAna_CAF1 13953 113 - 1 CAGUCUUUAUUAAUUAAUUAAGCGGAUGUAGGAGUAAAAGUGUCUUCGCGUUGGCUCCUUUCUCAGCUCGGAUGCUGUAAGUAAUUAAAUUAAAAUGCUAGCAUGUGUUUUUU------- .........(((((((.(((...(((...((((((....(((....)))....)))))).)))((((......))))))).)))))))...(((((((......)))))))..------- ( -24.10) >consensus CAAUCUUUAUUAAUCAAUUAAGCGGAUGUAGGAGUAAAUGUGUCUUCGCGUUGGCUCCUUUCGCAGCUCGGAUGCUGUAAGUAAUUAAAUUAAAAUGCGAGCAUGUGUUUUUUCGUUCGU .....................(((((...((((((.((((((....)))))).))))))))))).(((((.((....(((....))).......)).))))).................. (-27.41 = -27.63 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:14 2006