Locus 7145

Sequence ID 3L_DroMel_CAF1
Location 19,191,147 – 19,191,255
Length 108
Max. P 0.862670
window11602

overview

Window 2

Location 19,191,147 – 19,191,255
Length 108
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 95.18
Mean single sequence MFE -24.76
Consensus MFE -21.10
Energy contribution -21.26
Covariance contribution 0.16
Combinations/Pair 1.04
Mean z-score -1.58
Structure conservation index 0.85
SVM decision value 0.83
SVM RNA-class probability 0.862670
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19191147 108 - 23771897
ACGCAAAACAAAAACAAAAAGCUUCGAAUAAAAACCAAAUUGGCGCUUGGAGAUCAAAAAGGUGCCGCCGGUGGAGUGUUAGACGACAAAUAGACAUUCGAGGGCUGC
...................((((((((((.....(((...((((((((...........))))))))....)))..((((....)))).......)))))).)))).. ( -24.30)
>DroSec_CAF1 19523 104 - 1
ACGCAAAGCAAAAACAAAAAGCUUCGAAUAAAAACCAAAUUGGCGCUUGGAGAUCAAAAAGGUGCCGCCGGUGGAGUGUUAGACGACAAAUAGACAUUCGAGG----C
....................(((((((((.....(((...((((((((...........))))))))....)))..((((....)))).......))))))))----) ( -25.70)
>DroSim_CAF1 23825 108 - 1
ACGCAAAGCAAAAACAAAAAGCUUCGAAUAAAAACCAAAUUGGCGCUUGGAGAUCAAAAAGGUGCCGCCGGUGGAGUGUUAGACGACAAAUAGACAUUCGAGGGCUGC
...................((((((((((.....(((...((((((((...........))))))))....)))..((((....)))).......)))))).)))).. ( -24.30)
>DroEre_CAF1 22458 107 - 1
ACGCAAAACAAAAACAAAAAGCCUCGAAUAAAAACCAAAUUGGCGCUUGGAGAUCAAAAAGGUGCCGCUGGUG-AGUGUUAGACGACAAAUAGACAUUCGAGGGCUGC
...................((((((((((....((((...((((((((...........)))))))).)))).-..((((....)))).......)))))).)))).. ( -27.00)
>DroYak_CAF1 47386 107 - 1
ACGCAAAACAACAACAAAAAGGCUCGAAUAAAAACCAAAUUGGCGCUUGGAGAUCAAAAAGGUGCCGCUGGUG-AGUGUUAGACGACAAAUAGACAAUCGAGGGCUGC
....................(((((.((((...((((...((((((((...........)))))))).)))).-..))))...(((...........))).))))).. ( -22.50)
>consensus
ACGCAAAACAAAAACAAAAAGCUUCGAAUAAAAACCAAAUUGGCGCUUGGAGAUCAAAAAGGUGCCGCCGGUGGAGUGUUAGACGACAAAUAGACAUUCGAGGGCUGC
.....................((((((((....(((....((((((((...........))))))))..)))....((((....)))).......))))))))..... (-21.10 = -21.26 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:12 2006