Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,185,668 – 19,185,761 |
Length | 93 |
Max. P | 0.996598 |
Location | 19,185,668 – 19,185,761 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 94.07 |
Mean single sequence MFE | -14.38 |
Consensus MFE | -12.72 |
Energy contribution | -12.96 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.06 |
Mean z-score | -2.09 |
Structure conservation index | 0.88 |
SVM decision value | 2.72 |
SVM RNA-class probability | 0.996598 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19185668 93 - 23771897 UGGGGGCUUAGUUACAUAAUGGCGCCCAACAAAAAAGAAGAAAAAAAAACAACAGAAAUGGUCACAAAAAAUGUGAAAUAUUUAAGGCAAAGU ((((.(((............))).))))........................((....)).(((((.....)))))................. ( -15.70) >DroSec_CAF1 14152 91 - 1 UGGGGGCUUAGUUACAUAAUGGCGCCCAACAAAAAAGAAGAAA--AAACCAACAGAAAUGGUCACAAAAAAUGUGAAAUAUUUAAGGCAAAGU ((((.(((............))).))))...............--...((..((....)).(((((.....))))).........))...... ( -17.20) >DroSim_CAF1 17693 93 - 1 UGGGGGAUUAGUUACAUAAUGGCGCCCAACAAAAAAGAAGAAAAAAAACCAACAGAAAUGGUCACAAAAAAUGUGAAAUAUUUAAGGCAAAGU ((((.(((((......))))..).))))....................((..((....)).(((((.....))))).........))...... ( -13.30) >DroEre_CAF1 17048 88 - 1 UGGGGGCUUAGUUACAUAAUGGCGCCCAACAAAAAAGAAG----AAA-AAAACAGAAAUGGUCACAAAAAAUGUGAAAUAUUUAAGGCAAAGU ((((.(((............))).))))............----...-....((....)).(((((.....)))))................. ( -15.70) >DroYak_CAF1 38096 92 - 1 UGGGGACUUAGUUACAUAAUGGCGCCCAACAAAAAAGAAGGAAAAAA-AAAACAGAAGUGGUCACAAAAAAUGUGAAAUAUUUAAGGCAAAGU ..(((.....((((.....)))).)))....................-....(..(((((.(((((.....)))))..)))))..)....... ( -10.00) >consensus UGGGGGCUUAGUUACAUAAUGGCGCCCAACAAAAAAGAAGAAAAAAAAACAACAGAAAUGGUCACAAAAAAUGUGAAAUAUUUAAGGCAAAGU ((((.(((............))).))))........................(..(((((.(((((.....)))))..)))))..)....... (-12.72 = -12.96 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:07 2006