| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,184,611 – 19,184,701 |
| Length | 90 |
| Max. P | 0.999056 |
| Location | 19,184,611 – 19,184,701 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 97.97 |
| Mean single sequence MFE | -15.98 |
| Consensus MFE | -16.12 |
| Energy contribution | -15.88 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.07 |
| Structure conservation index | 1.01 |
| SVM decision value | 3.35 |
| SVM RNA-class probability | 0.999056 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19184611 90 + 23771897 AUUAUCAAUCAUUGGACUAUCUGUAGUCUGCUAGUCAGCAGUAAAUUGUCAAGUACAUAAUACUUAUAAUUUAUUUUGCAUAUAAAAAGA .............((((((....))))))........((((((((((((.(((((.....))))))))))))))..)))........... ( -16.50) >DroSec_CAF1 13024 88 + 1 AUUAUCAAUCAUUGGACUAUCUGAAGUCUGCUAGUCAGCAGUAAAUUGUCAAGUACAUAAUACUUAUAAUUUAUUUUGCAUAUAAAAA-- ..............(((((.(........).))))).((((((((((((.(((((.....))))))))))))))..))).........-- ( -16.00) >DroSim_CAF1 16547 88 + 1 AUUAUCAAUCAUUGGACUAUCUGAAGUCUGCUAGUCAGCAGUAAAUUGUCAAGUACAUAAUACUUAUAAUUUAUUUUGCAUAUAAAAA-- ..............(((((.(........).))))).((((((((((((.(((((.....))))))))))))))..))).........-- ( -16.00) >DroEre_CAF1 15940 88 + 1 AUUAUCAAUCAUUGGACUAUCUGAAGUCUGCUAGUCAGCAAUAAAUUGUCAAGUACAUAAUACUUAUAAUUUAUUUUGCAUAUAAAAA-- ..............(((((.(........).))))).((((((((((((.(((((.....))))))))))))))..))).........-- ( -15.70) >DroYak_CAF1 36968 88 + 1 AUUAUCAAUCAUUGGACUAUCUGAAGUCUGCUAGUCAGCAAUAAAUUGUCAAGUACAUAAUACUUAUAAUUUAUUUUGCAUAUAAAAA-- ..............(((((.(........).))))).((((((((((((.(((((.....))))))))))))))..))).........-- ( -15.70) >consensus AUUAUCAAUCAUUGGACUAUCUGAAGUCUGCUAGUCAGCAGUAAAUUGUCAAGUACAUAAUACUUAUAAUUUAUUUUGCAUAUAAAAA__ ..............(((((.(........).))))).((((((((((((.(((((.....))))))))))))))..)))........... (-16.12 = -15.88 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:03 2006