Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,184,148 – 19,184,253 |
Length | 105 |
Max. P | 0.733180 |
Location | 19,184,148 – 19,184,253 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 68.06 |
Mean single sequence MFE | -22.27 |
Consensus MFE | -6.77 |
Energy contribution | -6.89 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.31 |
Mean z-score | -1.95 |
Structure conservation index | 0.30 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.733180 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19184148 105 - 23771897 CAAACCCCUUGUUCAGAAG--------------CUUCCCCUAUAGAGUACACUCUGUAAAGCCGUUCAAGCGG-CUCAAGCUGUCCCGACUUAACUAAUUAAAGCAGCUCAAACAAAUAA ........(((((......--------------.......(((((((....))))))).((((((....))))-))..((((((...................))))))..))))).... ( -22.11) >DroSim_CAF1 16135 84 - 1 -----------------------------------UCCAUUAUAGAGUACACUUUAUAAAGCCGUUCAAGCGG-CUCAAGCUGUCCCGACUUAACUAAUUAAAGCAGCUCAAACAAAUAG -----------------------------------....((((((((....))))))))((((((....))))-))..((((((...................))))))........... ( -19.21) >DroEre_CAF1 15428 105 - 1 CAAGUCGCUUGUUCAGAAG--------------UCUUUAUUUUAGAGUAUACUCUAUAAAGCCGUUCGAGCGG-CUCAAGUUGUGCCGACUUAACUAAUUAAAGCAGCUCAAACAAAUAG ..(((.((((......(((--------------((.......(((((....)))))...((((((....))))-))...........))))).........)))).)))........... ( -23.76) >DroYak_CAF1 36450 95 - 1 CAAGUCCAUCAAC------------------------CAUUUUAGAGUAUACUCUAUAAGGCCGUUCAAGCGG-CUCAAGUUGUCCCGACUUAACUAAUUAAAGCUGCUCAAACAAAUAG .(((((...((((------------------------.....(((((....)))))...((((((....))))-))...))))....)))))............................ ( -20.80) >DroAna_CAF1 5850 111 - 1 CCAGCCCCUUCUUCAGACAUCCCAGGUCGAGGGGCUUCAUUAUAGAGA---------AAUGCUUUUGAAACGGCCUGAAGCAGCCCGGACUUAACUAAUUAAAGCAACUCAAAUAAAUUG ..((((((((.....(((.......)))))))))))........(((.---------..((((((.....(((.(((...))).))).............)))))).))).......... ( -25.47) >consensus CAAGCCCCUUGUUCAGA__________________UCCAUUAUAGAGUACACUCUAUAAAGCCGUUCAAGCGG_CUCAAGCUGUCCCGACUUAACUAAUUAAAGCAGCUCAAACAAAUAG ............................................((((...........((((((....)))).))...(((....................))).)))).......... ( -6.77 = -6.89 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:02 2006