Locus 7138

Sequence ID 3L_DroMel_CAF1
Location 19,183,608 – 19,183,720
Length 112
Max. P 0.698849
window11590

overview

Window 0

Location 19,183,608 – 19,183,720
Length 112
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 85.46
Mean single sequence MFE -23.50
Consensus MFE -20.22
Energy contribution -19.26
Covariance contribution -0.96
Combinations/Pair 1.35
Mean z-score -1.58
Structure conservation index 0.86
SVM decision value 0.35
SVM RNA-class probability 0.698849
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19183608 112 + 23771897
AACGACAGCCCUUUG-CUGAGAGAAUGCAAUGCACAUAGCUGAAAUGCUCAGGAAGUAGGUCACUCUAUAUCGUUAUUUUAAACUGUGUAUUGUAUUUAUCUAUAAAUUCAAU
.....((((.....)-)))(((((((((((((((((...((((.....))))((.(((((....))))).))............)))))))))))))).)))........... ( -29.10)
>DroSec_CAF1 12124 112 + 1
AACGACAUCCCUUUG-CUGAUAAAAUGCGAUGCAUAUAGCUCAAAUGCUCAGGAAGUAGGUCACUCUAUAUCGUUAUUUUAAACUGUGCAUUGUAUUUACCUAUAAAUUGAAU
...............-......((((((((((((((.(((......)))...((.(((((....))))).))............))))))))))))))............... ( -21.60)
>DroSim_CAF1 15617 112 + 1
AACGACAUCCCUUUG-CUGAUAAAAUGCAAUGCACAUAGCUCAAAUGCUCAGGAAGUAGGUCACUCUAUAUCGUUAUUUUAAACUGUGCAUUGUAUUUAACUAUAAAUUGAAU
...............-......((((((((((((((.(((......)))...((.(((((....))))).))............))))))))))))))............... ( -23.80)
>DroEre_CAF1 14965 110 + 1
---GACAGCCCUUUUGCUGAUAAAAUACGAUGCACAUAGCUGAAAUGCUCAGAAAGUGGGUCACUCUAUAUUGUUAUUUUAAAGGGUGCAUUGUACUUAACAACAAAUACAAU
---..((((......))))......((((((((((....((((.....))))...(((((....)))))................)))))))))).................. ( -23.10)
>DroYak_CAF1 35915 109 + 1
---GACGGCCCUUUU-CUGAUAAAAAGCGAUGCACAUAGCUAACAUGCUCAGAAAGUAGGUCACUCUAUAUUGUUAUUUCAAAGGGUGCAUAAUUCUUAAAAAUAAAUACAAU
---...((((.((((-((((......((...)).....((......))))))))))..)))).......((((((((((..((((((.....))))))..)))))...))))) ( -19.90)
>consensus
AACGACAGCCCUUUG_CUGAUAAAAUGCGAUGCACAUAGCUCAAAUGCUCAGGAAGUAGGUCACUCUAUAUCGUUAUUUUAAACUGUGCAUUGUAUUUAACUAUAAAUUCAAU
......................(((((((((((((..(((......)))...((.(((((....))))).)).............)))))))))))))............... (-20.22 = -19.26 +  -0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:01 2006