Locus 7137

Sequence ID 3L_DroMel_CAF1
Location 19,183,202 – 19,183,319
Length 117
Max. P 0.500000
window11589

overview

Window 9

Location 19,183,202 – 19,183,319
Length 117
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 93.39
Mean single sequence MFE -40.80
Consensus MFE -31.14
Energy contribution -31.83
Covariance contribution 0.69
Combinations/Pair 1.04
Mean z-score -2.87
Structure conservation index 0.76
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19183202 117 + 23771897
CCAUUUU-GGGUUAGACU-UGGGUGUAAUUUAUGAGCUGACCAGCGGGUGGU-GCGAAAGUGUGGCGCGCAAUUGCCCAACUUUAGUUUUCACCACCCAAGUUACUCCAAAUUGAAUUUG
.((.(((-((((..((((-(((((...........(((....))).(((((.-((.(((((.(((.(((....))))))))))).))..)))))))))))))))).))))).))...... ( -40.70)
>DroSec_CAF1 11723 117 + 1
CCAUUUU-GGGGUAGACU-UGGGUGUAAUUUAUGAGCUGACCAGCGGGUGGU-GCGAAAGUGUGGCGCGCAAUUGCCCAACUUAAGUUUUCACCACCCAAGUAACUCCAAAUUGAAUUUG
.((.(((-(((((..(((-((((((.((((((.(.(((....)))(((..((-(((...(.....).))).))..)))..).)))))).....))))))))).)))))))).))...... ( -44.50)
>DroSim_CAF1 15208 117 + 1
CCAUUUU-GGGGUAGACU-UGGGUGUAAUUUAUGAGCUGACCAGCGGGUGGU-GCGAAAGUGUGGCGCGCAAUUGCCCAACUUAAGUUUUCACCACCCAAGUAACUCCAAAUUGAAUUUG
.((.(((-(((((..(((-((((((.((((((.(.(((....)))(((..((-(((...(.....).))).))..)))..).)))))).....))))))))).)))))))).))...... ( -44.50)
>DroEre_CAF1 14570 117 + 1
CCAUUUU-GGGGUAGACU-UGGGUGUAAUUUAUGAGCUGACCAGCGGGUGGU-GCGAAAGUGUGGCUCGCAAUUGCCCAACUUAAAUUUUCACCACCCAAAUUACUCCGAAUUGAAUUUG
.((.(((-(((((((..(-((((((.((((((((.((......((((((.(.-.(....)..).))))))....)).))...)))))).....))))))).)))))))))).))...... ( -41.80)
>DroYak_CAF1 35523 117 + 1
CCAUUUU-GGGGUAGACU-UGGGAGUAAUUUAUGAGCUGACCAGCGGGUGGU-GCGAAAGUGUGGCCCGCAAUUGCCCAACUUAAAUUUUCACCACCCAAAUUACUCCAAAUUGAAUUUG
.((.(((-(((((((..(-((((.((((((((((.((......((((((.(.-.(....)..).))))))....)).))...))))))...))..))))).)))))))))).))...... ( -40.70)
>DroAna_CAF1 5074 120 + 1
GGGUUUCGGGGGUAGACUUUGGGUGUAAUUUACGAGCUGACCAGCGGGUGGUGGCGAAAGUGUAGCCCACAAUUGCCCAACUUAAAAUUUCACCACCCAAAUUACUUCAAAUUGAAUUUG
........(((((((..((((((((.(((((....(((....)))(((..(((((.........)))....))..)))......)))))....)))))))))))))))............ ( -32.60)
>consensus
CCAUUUU_GGGGUAGACU_UGGGUGUAAUUUAUGAGCUGACCAGCGGGUGGU_GCGAAAGUGUGGCGCGCAAUUGCCCAACUUAAAUUUUCACCACCCAAAUUACUCCAAAUUGAAUUUG
........(((((((....((((((..........(((....)))(((..((.(((...(.....).))).))..)))...............))))))..)))))))............ (-31.14 = -31.83 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:00 2006