Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,179,625 – 19,179,744 |
Length | 119 |
Max. P | 0.946442 |
Location | 19,179,625 – 19,179,744 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.60 |
Mean single sequence MFE | -36.93 |
Consensus MFE | -35.95 |
Energy contribution | -36.28 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.14 |
Structure conservation index | 0.97 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946442 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19179625 119 + 23771897 UGACACAAGACAUGGAGGAGCCAUCGUUUCCAACUUCCGACGACUACUUAGAGACGCCUAAACAGCUUCAUUACUUUUAUGGGGCUGACGGCGCGCUUCGUUGGCU-GCCAUUGUCUGUU .......((((((((.((((.......))))..(..(((((((......((.(.((((....(((((((((.......)))))))))..))))).)))))))))..-)))).)))))... ( -37.10) >DroSec_CAF1 8140 119 + 1 UGACACAAGACAUGGAGGAGCCAUCGUUUCCAACUUCCGACGACUACUUAGAGACGCCUAAACAGCUUCAUUACUUUUAUGGGGCUGACGGCGCGCUUCGUUGGCU-GCCAUUGUCUGUU .......((((((((.((((.......))))..(..(((((((......((.(.((((....(((((((((.......)))))))))..))))).)))))))))..-)))).)))))... ( -37.10) >DroSim_CAF1 11249 119 + 1 UGACACAAGACAUGGAGGAGCCAUCGUUUCCAACUUCCGACGACUACUUAGAGACGCCUAAACAGCUUCAUUACUUUUAUGGGGCUGACGGCGCGCUUCGUUGGCU-GCCAUUGUCUGUU .......((((((((.((((.......))))..(..(((((((......((.(.((((....(((((((((.......)))))))))..))))).)))))))))..-)))).)))))... ( -37.10) >DroEre_CAF1 10896 119 + 1 UGACACAAGACAUGGAGGAGCCAUCGUUUCCAACUUCCGACGACUACUUAGAGACGCCUAAACAGCUUCAUUACUUUUAUGGGGCUGACGGCGCGCUUCGUUGGCU-GCCAUUGUCUGUU .......((((((((.((((.......))))..(..(((((((......((.(.((((....(((((((((.......)))))))))..))))).)))))))))..-)))).)))))... ( -37.10) >DroYak_CAF1 12904 119 + 1 UGACACAAGACAUGGAGGAGCCAUCGUUUCCAACUUCCGACGACUACUUAGAGACGCCUAAACAGCUUCAUUACUUUUAUGGGGCUGACGGCGCGCUUCGUUGGCU-GCCAUUGUCUGUU .......((((((((.((((.......))))..(..(((((((......((.(.((((....(((((((((.......)))))))))..))))).)))))))))..-)))).)))))... ( -37.10) >DroAna_CAF1 1305 120 + 1 UGACACAAGACAUGGAGGAGCCAUCGUUGCCGACUUCCGACGACUACUUAGAGACGCCUAAACAGCUUCAUUACUUUUAUGGGACUGACGGCUCGCUUCGUUGGCUCGCCAUUGUCUGUU .......((((((((..((((((((((((........))))))..((..((.((.(((....(((..((((.......))))..)))..))))).))..)))))))).))).)))))... ( -36.10) >consensus UGACACAAGACAUGGAGGAGCCAUCGUUUCCAACUUCCGACGACUACUUAGAGACGCCUAAACAGCUUCAUUACUUUUAUGGGGCUGACGGCGCGCUUCGUUGGCU_GCCAUUGUCUGUU .......((((((((...((((((((((..........)))))..((..((.(.((((....(((((((((.......)))))))))..))))).))..)))))))..))).)))))... (-35.95 = -36.28 + 0.33)
Location | 19,179,625 – 19,179,744 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.60 |
Mean single sequence MFE | -36.73 |
Consensus MFE | -35.93 |
Energy contribution | -35.82 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -1.11 |
Structure conservation index | 0.98 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.943598 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19179625 119 - 23771897 AACAGACAAUGGC-AGCCAACGAAGCGCGCCGUCAGCCCCAUAAAAGUAAUGAAGCUGUUUAGGCGUCUCUAAGUAGUCGUCGGAAGUUGGAAACGAUGGCUCCUCCAUGUCUUGUGUCA .(((((((.(((.-((((.((((.(((((((..((((..(((.......)))..))))....)))))......))..)))).....((((....))))))))...))))))).))).... ( -35.60) >DroSec_CAF1 8140 119 - 1 AACAGACAAUGGC-AGCCAACGAAGCGCGCCGUCAGCCCCAUAAAAGUAAUGAAGCUGUUUAGGCGUCUCUAAGUAGUCGUCGGAAGUUGGAAACGAUGGCUCCUCCAUGUCUUGUGUCA .(((((((.(((.-((((.((((.(((((((..((((..(((.......)))..))))....)))))......))..)))).....((((....))))))))...))))))).))).... ( -35.60) >DroSim_CAF1 11249 119 - 1 AACAGACAAUGGC-AGCCAACGAAGCGCGCCGUCAGCCCCAUAAAAGUAAUGAAGCUGUUUAGGCGUCUCUAAGUAGUCGUCGGAAGUUGGAAACGAUGGCUCCUCCAUGUCUUGUGUCA .(((((((.(((.-((((.((((.(((((((..((((..(((.......)))..))))....)))))......))..)))).....((((....))))))))...))))))).))).... ( -35.60) >DroEre_CAF1 10896 119 - 1 AACAGACAAUGGC-AGCCAACGAAGCGCGCCGUCAGCCCCAUAAAAGUAAUGAAGCUGUUUAGGCGUCUCUAAGUAGUCGUCGGAAGUUGGAAACGAUGGCUCCUCCAUGUCUUGUGUCA .(((((((.(((.-((((.((((.(((((((..((((..(((.......)))..))))....)))))......))..)))).....((((....))))))))...))))))).))).... ( -35.60) >DroYak_CAF1 12904 119 - 1 AACAGACAAUGGC-AGCCAACGAAGCGCGCCGUCAGCCCCAUAAAAGUAAUGAAGCUGUUUAGGCGUCUCUAAGUAGUCGUCGGAAGUUGGAAACGAUGGCUCCUCCAUGUCUUGUGUCA .(((((((.(((.-((((.((((.(((((((..((((..(((.......)))..))))....)))))......))..)))).....((((....))))))))...))))))).))).... ( -35.60) >DroAna_CAF1 1305 120 - 1 AACAGACAAUGGCGAGCCAACGAAGCGAGCCGUCAGUCCCAUAAAAGUAAUGAAGCUGUUUAGGCGUCUCUAAGUAGUCGUCGGAAGUCGGCAACGAUGGCUCCUCCAUGUCUUGUGUCA .(((((((.(((.((((((.((.((.(((((..((((..(((.......)))..))))....))).)).)).....((((.(....).))))..)).))))))..))))))).))).... ( -42.40) >consensus AACAGACAAUGGC_AGCCAACGAAGCGCGCCGUCAGCCCCAUAAAAGUAAUGAAGCUGUUUAGGCGUCUCUAAGUAGUCGUCGGAAGUUGGAAACGAUGGCUCCUCCAUGUCUUGUGUCA .(((((((.(((..((((.((((.(((((((..((((..(((.......)))..))))....)))))......))..)))).....((((....))))))))...))))))).))).... (-35.93 = -35.82 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:55 2006