Locus 7133

Sequence ID 3L_DroMel_CAF1
Location 19,178,334 – 19,178,454
Length 120
Max. P 0.927653
window11582

overview

Window 2

Location 19,178,334 – 19,178,454
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 97.50
Mean single sequence MFE -44.90
Consensus MFE -40.22
Energy contribution -41.23
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -3.08
Structure conservation index 0.90
SVM decision value 1.18
SVM RNA-class probability 0.927653
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19178334 120 - 23771897
AAGGGACGAGCACCAGGAGCUAGAGCAAAGUUAAGCAAAACUUUGUUAUUUGUUUUAAGUGGCAGGUUGUGAGACGCACGCUAGCUACUUGCAGACUGCCUCCGAGGGUUGUUCGCCUCC
..(((.((((((((.((((.((((((((((((......))))))))).(((((...(((((((.(((.(((.....)))))).))))))))))))))).))))...)).))))))))).. ( -46.20)
>DroSec_CAF1 6793 120 - 1
AAAGGACGAGCACCAGGAGCUAGAGCAAAGUUAAGCAAAACUUUGUUAUUUGUUUUAAGUGGCAGGUUGUGAGACGCACGCUAGCUUCUUGCAGACUGCCUCCGAGGGUUGUUCGCCUCC
..(((.((((((((.((((((((((((((....(((((....))))).)))))))).)))(((((.(((..(((.((......)).)))..))).))))))))...)).))))))))).. ( -46.80)
>DroSim_CAF1 9811 120 - 1
AAAGGACGAGCACCAGGAGCUAGAGCAAAGUUAAGCAAAACUUUGUUAUUUGUUUUAAGUGGCAGGUUGUGAGACGCACGCUAGCUACUUGCAGACUGCCUCCGAGGGUUGUUCGCCUCC
..(((.((((((((.((((.((((((((((((......))))))))).(((((...(((((((.(((.(((.....)))))).))))))))))))))).))))...)).))))))))).. ( -46.20)
>DroYak_CAF1 11704 120 - 1
AAAGGACGAGAACCAGGAGCUAGAGCAAAGUUAAGCAAAACUUUGUUAUUUGUUUUAAGUGGCAGGUUGUGAGACGCACGCUAGCUACUUGCAGACUGCCUCCGAGGGUUGUUCUGCCCC
..(((((((...((.((((.((((((((((((......))))))))).(((((...(((((((.(((.(((.....)))))).))))))))))))))).))))..)).)))))))..... ( -40.40)
>consensus
AAAGGACGAGCACCAGGAGCUAGAGCAAAGUUAAGCAAAACUUUGUUAUUUGUUUUAAGUGGCAGGUUGUGAGACGCACGCUAGCUACUUGCAGACUGCCUCCGAGGGUUGUUCGCCUCC
...((.((((((((.((((.((((((((((((......))))))))).(((((...(((((((.(((.(((.....)))))).))))))))))))))).))))...)).))))))))... (-40.22 = -41.23 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:53 2006