Locus 7132

Sequence ID 3L_DroMel_CAF1
Location 19,178,175 – 19,178,294
Length 119
Max. P 0.649083
window11581

overview

Window 1

Location 19,178,175 – 19,178,294
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.16
Mean single sequence MFE -29.22
Consensus MFE -28.82
Energy contribution -29.26
Covariance contribution 0.44
Combinations/Pair 1.03
Mean z-score -1.17
Structure conservation index 0.99
SVM decision value 0.24
SVM RNA-class probability 0.649083
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19178175 119 + 23771897
GUUCCCAGCGAGUGAAGGAAAAGUCGAAGAAGAUGGCGGAGCGGAGACAUUUGCCAA-AAAUCCUUGCCUCGCCAUAUAUCGUUUUAACAUAAUUUCUGUGGUAAAAUUAACUUUAUGAA
.......(((((..(((((...(((......)))((((((..(....).))))))..-...)))))..)))))((((....((((((.((((.....)))).))))))......)))).. ( -31.70)
>DroSec_CAF1 6634 119 + 1
GUUCCCAGCGAGUGAAGGAAAAGUCGAAGAAGAUGGCGGAGCGGAGACAUUUGCCAA-AAAUCCUUGCCUCGCCAUAUAUCGUUUUAACAUAAUUUCUGUGGUAAAAUUAACUUUAUGAA
.......(((((..(((((...(((......)))((((((..(....).))))))..-...)))))..)))))((((....((((((.((((.....)))).))))))......)))).. ( -31.70)
>DroSim_CAF1 9652 119 + 1
GUUCCCAGCGAGUGAAGGAAAAGUCGAAGAAGAUGGCGGAGCGGAGACAUUUGCCAA-AAAUCCUUGCCUCGCCAUAUAUCGUUUUAACAUAAUUUCUGUGGUAAAAUUAACUUUAUGAA
.......(((((..(((((...(((......)))((((((..(....).))))))..-...)))))..)))))((((....((((((.((((.....)))).))))))......)))).. ( -31.70)
>DroEre_CAF1 9387 118 + 1
GUUCCCAGCCAGUGAAGGAAAAGUCGAAGAAGAUGGCGGAGCGGAGACAUUUGCCAA-AAAUCCUUGCC-CGCCAUAUAUCGUUUUAACAUAAUUUCUGUGGUAAAAUUAACUUUAUGAA
...........((((((...........((..(((((((.(((....)((((.....-))))....)))-))))))...))((((((.((((.....)))).))))))...))))))... ( -25.70)
>DroYak_CAF1 11544 120 + 1
GUUCCCAGCCAGUAAAGGAAAAGUCGAAGAAGAUGGCGGAGCGGAGACAUUUGCCAAAAAAUCCUUGCCUCGCCGUAUAUCGUUUUAACAUAAUUUCUGUGGUAAAAUUAACUUUAUGAA
.......((.((..(((((...(((......)))((((((..(....).))))))......)))))..)).))((((....((((((.((((.....)))).))))))......)))).. ( -25.30)
>consensus
GUUCCCAGCGAGUGAAGGAAAAGUCGAAGAAGAUGGCGGAGCGGAGACAUUUGCCAA_AAAUCCUUGCCUCGCCAUAUAUCGUUUUAACAUAAUUUCUGUGGUAAAAUUAACUUUAUGAA
.......(((((..(((((...(((......)))((((((..(....).))))))......)))))..)))))((((....((((((.((((.....)))).))))))......)))).. (-28.82 = -29.26 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:51 2006