Locus 7130

Sequence ID 3L_DroMel_CAF1
Location 19,177,031 – 19,177,151
Length 120
Max. P 0.996309
window11576

overview

Window 6

Location 19,177,031 – 19,177,151
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.50
Mean single sequence MFE -32.00
Consensus MFE -30.68
Energy contribution -30.32
Covariance contribution -0.36
Combinations/Pair 1.09
Mean z-score -1.91
Structure conservation index 0.96
SVM decision value 2.68
SVM RNA-class probability 0.996309
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19177031 120 - 23771897
CCAAAGUAACUGGCUGUCACAGGCCAUAACUGGACAAGGCUUUUGGCUGCUUCUUACCACUUUCGGGACUGGUCUAUGGAAAACUUUUCCAUUUCCUCUAGUCAAUGACAGACUCUUUUC
.....((((..(((.((((.(((((............))))).)))).)))..))))..((.(((.((((((...((((((.....)))))).....))))))..))).))......... ( -32.50)
>DroSec_CAF1 5548 120 - 1
CCAAAGUAACUGGCUGUCACAGGCCAUAACUGGACAAGGCUUUUGGCCGCUUCUUACCACUUUCGGGACUGGUCUAUGGAAAACUUUUUCAUUUCCUCUAGUCAAUGACAGACUCUUUUC
.....((((..(((((((.(((.......))))))).(((.....))))))..))))..((.(((.((((((...((((((.....)))))).....))))))..))).))......... ( -30.40)
>DroSim_CAF1 8585 120 - 1
CCAAAGUAACUGGCUGUCACAGGCCAUAACUGGACAAGGCUUUUGGCUGCUUCUUACCACUUUCGGGACUGGUCUAUGGAAAACUUUUCCAUUUCCUCUAGUCAAUGACAGACUCUUUUC
.....((((..(((.((((.(((((............))))).)))).)))..))))..((.(((.((((((...((((((.....)))))).....))))))..))).))......... ( -32.50)
>DroEre_CAF1 8288 120 - 1
CCAAAGUAACUGGCUGUCACAGGCCAUAACUGGACAAGGCUUUUGGCUGCCUCUUACCACUUUCGGGACCGGUCUAUGGAAAACUUUUCCAUUUCCUCUAGUCAAUGACAGACUCUUUUC
.....((((..(((.((((.(((((............))))).)))).)))..)))).......(((...((...((((((.....))))))..))(((.(((...)))))))))..... ( -31.00)
>DroYak_CAF1 10369 120 - 1
CCAAAGUAACAGGCUGUCACAGGACAUAACUGGACAAGGCUUUUGGCUGCCUCUUACCACUUUCGGGACUGGUCUAUGGAAAAGUUUUCCAUUUCCUCUAGUCAAUGACAGACUCUUUUC
.....((((.((((((((.(((.......))))))).(((.....))))))).))))..((.(((.((((((...((((((.....)))))).....))))))..))).))......... ( -33.60)
>consensus
CCAAAGUAACUGGCUGUCACAGGCCAUAACUGGACAAGGCUUUUGGCUGCUUCUUACCACUUUCGGGACUGGUCUAUGGAAAACUUUUCCAUUUCCUCUAGUCAAUGACAGACUCUUUUC
.....((((..(((((((.(((.......))))))).(((.....))))))..))))..((.(((.((((((...((((((.....)))))).....))))))..))).))......... (-30.68 = -30.32 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:47 2006