Locus 713

Sequence ID 3L_DroMel_CAF1
Location 2,160,038 – 2,160,134
Length 96
Max. P 0.782458
window1091

overview

Window 1

Location 2,160,038 – 2,160,134
Length 96
Sequences 4
Columns 103
Reading direction reverse
Mean pairwise identity 85.91
Mean single sequence MFE -21.88
Consensus MFE -17.66
Energy contribution -18.48
Covariance contribution 0.81
Combinations/Pair 1.04
Mean z-score -1.75
Structure conservation index 0.81
SVM decision value 0.56
SVM RNA-class probability 0.782458
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2160038 96 - 23771897
AGAAAAAUGCAACGACUGAAACAUUCUGGCUCAAAUAAUUCAUUUGAAUUAGACCCGCAGAGCCGUGCAAAAGCUGUGAAAACCAGGGAAAACCAA-------
.......((((..((.((...)).)).(((((...((((((....))))))(.....).))))).))))......((....))..((.....))..------- ( -16.20)
>DroSec_CAF1 212140 103 - 1
AGAAAAAUGCACCGACUGAAACAUUCUGGCUCAAAUAAUUCAUUUGAAUUAGACCCGCAGAGCCGUGCAAAAGCUGUGAAAACCAGGGAAAACCGGGGAAAAC
.......(((((.((.((...)).)).(((((...((((((....))))))(.....).)))))))))).............((.((.....)).))...... ( -21.50)
>DroEre_CAF1 216796 88 - 1
AGAAAAAUGCUCCGACUGAAAUAUUCUGGCUCAAAUAAUUCAUUUGAGUUAGACCCGCAGAGCCGUGCAAAAUCUGUGAAAACCACGG---------------
...........(((..........((((((((((((.....))))))))))))..((((((...........)))))).......)))--------------- ( -22.10)
>DroYak_CAF1 210339 88 - 1
AGAAAAAUGCACCGACUGAAACAUUCUGGCUCAAAUAAUUCAUUUGGGUUAGACCCGCAGGGCCGUGCAAAAGCUGUGAAAACCAGCG---------------
.......(((((.(.(((......((((((((((((.....))))))))))))....)))..).)))))...(((((....).)))).--------------- ( -27.70)
>consensus
AGAAAAAUGCACCGACUGAAACAUUCUGGCUCAAAUAAUUCAUUUGAAUUAGACCCGCAGAGCCGUGCAAAAGCUGUGAAAACCAGGG_______________
.......(((((.(.(((......((((((((((((.....))))))))))))....)))..).)))))......((....)).................... (-17.66 = -18.48 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:13 2006