Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,176,551 – 19,176,711 |
Length | 160 |
Max. P | 0.706668 |
Location | 19,176,551 – 19,176,671 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.64 |
Mean single sequence MFE | -32.92 |
Consensus MFE | -29.28 |
Energy contribution | -29.12 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -1.22 |
Structure conservation index | 0.89 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593978 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19176551 120 - 23771897 CCCCUUUUGUGAGUGAGUGAGUGACAUUUGCCAGAGCGCCUAAUUGUAGGCAAUUAAUUUCUGGCACAUCAAAGCGGCGGAAGGAAGCUUAACUGGCAGGAAGAGCAAACAAGGAAGACA ..((((((((......((.....)).((((((((((((((((....)))))......((((((.(.(......).).))))))...)))...))))))))....))))..))))...... ( -31.70) >DroSec_CAF1 5069 120 - 1 CCCCUUUUGUGAGUGAGUGAGUGACAUUUGCCAGAGCGCCUAAUUGUAGGCAAUUAAUUUCUGGCACAUCAAAGCGGCGGAAGGAAGCUUAACUGGCAGGAAGAGCAAACAAGGAAGACA ..((((((((......((.....)).((((((((((((((((....)))))......((((((.(.(......).).))))))...)))...))))))))....))))..))))...... ( -31.70) >DroSim_CAF1 8106 120 - 1 CCCCUUUUUUGAGUGAGUGAGUGACAUUUGCCAGAGCGCCUAAUUGUAGGCAAUUAAUUUCUGGCACAUCAAAGCGGCGGAAGGAAGCUUAACUGGCAGGAAGAGCAAACAAGGAAGACA ...((((((((..((.((.....)).((((((((((((((((....)))))......((((((.(.(......).).))))))...)))...)))))))).....))..))))))))... ( -34.10) >DroEre_CAF1 7815 114 - 1 CCCUUU------GUGAGUGAGUGACAUUUGCCAGAGCGCCUAAUUGUAGGCAAUUAAUUUCUGGCACAUCAAAGCGGCGGAAGGAAGCUUAACUGGCAGGAAGAGCAAACAAGGAAGACA ..((((------((...((..(....((((((((((((((((....)))))......((((((.(.(......).).))))))...)))...))))))))..)..)).))))))...... ( -33.30) >DroYak_CAF1 9898 114 - 1 CCCUUU------CUGAGUGAGUGACAUUUGCCAGAGCGCCUAAUUGUAGGCAAUUAAUUUCUGGCACAUCAAAGCGGCGGAAGGAAGUUUAACUGGCAGGAAGAGCAAACAAGGAAGACA ..((((------((..((..((....((((((((...(((((....)))))((((..((((((.(.(......).).))))))..))))...))))))))....))..)).))))))... ( -33.80) >consensus CCCCUUUU_UGAGUGAGUGAGUGACAUUUGCCAGAGCGCCUAAUUGUAGGCAAUUAAUUUCUGGCACAUCAAAGCGGCGGAAGGAAGCUUAACUGGCAGGAAGAGCAAACAAGGAAGACA ................((..((....((((((((((((((((....)))))......((((((.(.(......).).))))))...)))...))))))))....))..)).......... (-29.28 = -29.12 + -0.16)
Location | 19,176,591 – 19,176,711 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.71 |
Mean single sequence MFE | -29.84 |
Consensus MFE | -24.46 |
Energy contribution | -24.22 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.47 |
Structure conservation index | 0.82 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.706668 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19176591 120 + 23771897 CCGCCGCUUUGAUGUGCCAGAAAUUAAUUGCCUACAAUUAGGCGCUCUGGCAAAUGUCACUCACUCACUCACAAAAGGGGAGCAUCGACCACCCUACUGUUUGCUAAGAAGUAAUAACCA .....((((((((.(((((((.......((((((....)))))).)))))))...)))............(((..((((..(......)..))))..))).......)))))........ ( -27.20) >DroSec_CAF1 5109 120 + 1 CCGCCGCUUUGAUGUGCCAGAAAUUAAUUGCCUACAAUUAGGCGCUCUGGCAAAUGUCACUCACUCACUCACAAAAGGGGAGCAUCGACCACCCUACUGUUUGCUAAGAAGCACUAACCA .....((((((((.(((((((.......((((((....)))))).)))))))...)))............(((..((((..(......)..))))..))).......)))))........ ( -29.60) >DroSim_CAF1 8146 120 + 1 CCGCCGCUUUGAUGUGCCAGAAAUUAAUUGCCUACAAUUAGGCGCUCUGGCAAAUGUCACUCACUCACUCAAAAAAGGGGAGCAUCGACCACCCAACUGUUUGCUAAGAAGCACUAACCA .....((((((((.(((((((.......((((((....)))))).)))))))...)))..................(((..(......)..))).............)))))........ ( -27.80) >DroEre_CAF1 7855 114 + 1 CCGCCGCUUUGAUGUGCCAGAAAUUAAUUGCCUACAAUUAGGCGCUCUGGCAAAUGUCACUCACUCAC------AAAGGGGGCAUCGACCACCCUUCUGCUUCGUAAGAAGUACUAACAA .........((((.(((((((.......((((((....)))))).)))))))...)))).........------.(((((((......)).))))).((((((....))))))....... ( -33.50) >DroYak_CAF1 9938 113 + 1 CCGCCGCUUUGAUGUGCCAGAAAUUAAUUGCCUACAAUUAGGCGCUCUGGCAAAUGUCACUCACUCAG------AAAGGGGGUAUCGACCACCC-UCUGUUUCCUAAGAAGUACUAACCA .....((((((((.(((((((.......((((((....)))))).)))))))...))).......(((------(..((((((....))).)))-))))........)))))........ ( -31.10) >consensus CCGCCGCUUUGAUGUGCCAGAAAUUAAUUGCCUACAAUUAGGCGCUCUGGCAAAUGUCACUCACUCACUCA_AAAAGGGGAGCAUCGACCACCCUACUGUUUGCUAAGAAGUACUAACCA .....((((((((.(((((((.......((((((....)))))).)))))))...)))...................(((...........))).............)))))........ (-24.46 = -24.22 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:42 2006